Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,157,551 – 8,157,671 |
Length | 120 |
Max. P | 0.542326 |
Location | 8,157,551 – 8,157,671 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.50 |
Mean single sequence MFE | -39.07 |
Consensus MFE | -21.44 |
Energy contribution | -22.28 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.41 |
Mean z-score | -1.93 |
Structure conservation index | 0.55 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542326 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8157551 120 - 23771897 AUACGAUUCUUAAUUCUCUAAACGAUGUGGUCUACUUGCUGCGUCAUUCGUCGGCCGUGUCGCAUCAGCAACAAUUGCUGCUUUUGCUGCCUUCGCUGCGGCAGGCGGAUGAUAUCCUGC .......................((((..((......))..))))..(((((.(((.(((((((.(((((.....))))).....((.......)))))))))))).)))))........ ( -37.60) >DroVir_CAF1 12762 120 - 1 ACACCAUACUCAAUUCGCUCAACGAUGUUGUCUACUUGCUGCGCCACUCGUCCGCGGUGUCCCAUCAGCAGCAGCUGCUGCUGUUGUUGCCCUCGCUGCGGCAGGCGGACGACAUACUGC ................((......((((((((..(((((((((((((.((....)))))......((((((((((....)))))))))).....)).))))))))..))))))))...)) ( -47.40) >DroPse_CAF1 10767 120 - 1 ACACCAUACUAAAUUCACUGAACGAUGUGGUCUACCUGCUUCGCCACUCCUCCGCGGUGUCCCAUCAACAGCAGCUUCUGCUCAUCCUGCCCUCGCUGCGGCAAGCAGACGAUAUUUUGC ..((((((.................))))))....((((((.(((((.((.....)).))..........(((((....((.......))....))))))))))))))............ ( -28.93) >DroGri_CAF1 11577 120 - 1 ACACCAUCCUUAAUUCCUUGAAUGAUGUCGUCUACCUGCUGCGCCACUCCUCCGCCGUCUCCCAUCAGCAGCAGUUGCUGUUGCUGUUGCCCUCGUUGCGCCAGGCGGACGAAAUACUGC ....((((.((((....))))..))))(((((..((((..((((.((..(......).....((.(((((((((...))))))))).)).....)).))))))))..)))))........ ( -34.80) >DroMoj_CAF1 11937 120 - 1 ACACCAUCCUCAACUCGCUCAACGACGUGGUCUACCUGCUGCGCCACUCCUCGGCCGUCUCGCACCAGCAGCAGCUGCUCCUGCUGCUGCCGUCGCUGCGACAGGCGGAUGACAUACUGC ....(((((.(...((((....(((((((((......(.((.(((.......))))).)....))))((((((((.......)))))))))))))..))))...).)))))......... ( -42.70) >DroAna_CAF1 44502 120 - 1 AUACGAUUCUCAAUUCAUUGAACGAUGUCGUCUAUCUCCUGAGGCAUUCGUCAGCGGUAUCGCAUCAGCAACAGCUACUUCUGUUGCUGCCGUCGCUGCGACAGGCGGACGACAUAUUGC ...((.(((..........)))))(((((((((....((((.(((....))).(((((..((...(((((((((......))))))))).))..)))))..)))).)))))))))..... ( -43.00) >consensus ACACCAUACUCAAUUCACUGAACGAUGUGGUCUACCUGCUGCGCCACUCCUCCGCCGUGUCCCAUCAGCAGCAGCUGCUGCUGUUGCUGCCCUCGCUGCGGCAGGCGGACGACAUACUGC ........................((((.((((.((((.(((((.........))..........((((((((((....))))))))))........))).)))).)))).))))..... (-21.44 = -22.28 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:25 2006