Locus 2853

Sequence ID 3L_DroMel_CAF1
Location 8,148,590 – 8,148,693
Length 103
Max. P 0.888037
window4458

overview

Window 8

Location 8,148,590 – 8,148,693
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 86.31
Mean single sequence MFE -31.16
Consensus MFE -23.60
Energy contribution -24.96
Covariance contribution 1.36
Combinations/Pair 1.18
Mean z-score -2.11
Structure conservation index 0.76
SVM decision value 0.95
SVM RNA-class probability 0.888037
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8148590 103 + 23771897
UUAGGAGCGACUGAUUUUUGACUGGAUGCAGGAGGUGUGUGAUUAAGAUGAUCUGGUUUCUGGUUCAUGCUAGAAUUCAUAUCUGUUUGCAGCUCCUGUAUGA
((((......))))...........(((((((((.((((......(((((...((..(((((((....)))))))..)))))))...)))).))))))))).. ( -31.10)
>DroSec_CAF1 3815 103 + 1
UUAGGAACGGCUGAUUCUUUGCUGGUUGCAGAAGGUGUGUGAUUAAGAUGAGAUGGUUUUUGGUUCAUGUUAGAAUUCAUAUCUGUUUGCAGCUCCUGUGUGA
.(((((.((((.........))))(((((((((((((((.((((....(((.((((........)))).))).))))))))))).)))))))))))))..... ( -31.00)
>DroSim_CAF1 3825 103 + 1
UUAGGAACGGCGGAUUCUUGGCUGGUUGCAGAAGGUGUGUGAUUAAGAUGAGAUGGUUUUUGGUUCAUGUUAGAAUUCAUAUCUGUUUGCAGCUCCUGUGUGA
.(((((.((((.((...)).))))(((((((((((((((.((((....(((.((((........)))).))).))))))))))).)))))))))))))..... ( -31.50)
>DroEre_CAF1 4541 103 + 1
UUAGGAGCAACUGAUUUUUGGCUGAUUGCAGGAGGUGUGUGACUAAGAUGUGCUGGUUUCUGGUUCAUGGUAGCAGUCUUAUCUGUUUGCAGAUCCUGUGUGC
.((((((((((.(((....(((((.((((..(((.((.(.(((((........))))).))).)))...)))))))))..))).).))))...)))))..... ( -23.70)
>DroYak_CAF1 3953 103 + 1
UUAGGAGCAGCUAAUUGUUGGCUGGAUGCAGGAGGUGUGUGACUGGGAUGAGCUGGUUUCUGGUUCAUGGUAGCACUCUUAUUUGUUUGCAGCUCCUGCGUGC
.......((((((.....)))))).(((((((((.((((((.(((..((((((..(...)..))))))..))))))............))).))))))))).. ( -38.50)
>consensus
UUAGGAGCGGCUGAUUCUUGGCUGGUUGCAGGAGGUGUGUGAUUAAGAUGAGCUGGUUUCUGGUUCAUGGUAGAAUUCAUAUCUGUUUGCAGCUCCUGUGUGA
.(((((.(((((((...)))))))(((((((((((((((...(((..(((((((((...)))))))))..)))....))))))).)))))))))))))..... (-23.60 = -24.96 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:24 2006