Locus 2852

Sequence ID 3L_DroMel_CAF1
Location 8,147,512 – 8,147,624
Length 112
Max. P 0.767296
window4457

overview

Window 7

Location 8,147,512 – 8,147,624
Length 112
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 79.06
Mean single sequence MFE -45.43
Consensus MFE -27.22
Energy contribution -28.33
Covariance contribution 1.11
Combinations/Pair 1.30
Mean z-score -1.83
Structure conservation index 0.60
SVM decision value 0.52
SVM RNA-class probability 0.767296
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8147512 112 - 23771897
GCCGUUUCCCACGCUUGCCGAGGCUCAGGAGAUGGCCAGUCAGGGAGCAGUGGUGGCACACAGUCGCAACAUCUCACGGCUGCCCCAAGCGGCCAAUGCA---GCCAUCCUGCAA
(((((((((...((((....))))...)))))))))..........((((.((((((.....((....)).......((((((.....))))))......---)))))))))).. ( -44.80)
>DroVir_CAF1 3765 115 - 1
ACCGUUCCCCACGCUGGCUGAGGCCGAGCAGAUGGCAAACCAGGGUGCGUUGGCGGCGCAUAGUCGCAACAUUGAACGACUGCCACAAGCCGCCAAUGCGAAUGCCAUCUACCAG
............((((((....))).)))((((((((.((....))(((((((((((...((((((..........))))))......)))))))))))...))))))))..... ( -49.60)
>DroPse_CAF1 3070 112 - 1
GCCGUUUCCCACGCUGGCCGAGGCCCAGGAAAUGGCCUCGCAGGGCGCCCUGGUGGCCCACAGUCGCAACAUUGAGCGACUGCCCCACGCGGCCAAUGCG---GCCAUUCUACAA
(((((......(((.((((((((((........)))))).((((....))))..))))..(((((((........)))))))......)))......)))---)).......... ( -50.80)
>DroWil_CAF1 5462 112 - 1
GCCAUUCCCCACCCUGGCCGAGGCGGAACAGAUGGCCAACGAUGGAGCAGUGGCUGCCCACAGUCGCAAUAUUGAGCGUUUACCCCAAGCAGCUAAUUCG---GCCAUUCUCCAG
(((.((..((.....))..)))))(((...(((((((..(((((.....(((((((....)))))))..)))))(((((((.....)))).))).....)---)))))).))).. ( -35.20)
>DroYak_CAF1 2845 112 - 1
GCCGUUUCCCACACUUGCCGAGGCCCAGGAGAUGGCCAGCCAAGGAGCAUUGGUGGCACACAGUCGCAACAUCUCAAGGCUGCCACAGGCGGCCAAUGCA---GCCAUCCUGCAA
(((((((((.......((....))...)))))))))..((..(((((((((.(((((.....)))))..........(((((((...)))))))))))).---....)))))).. ( -41.40)
>DroPer_CAF1 3985 112 - 1
GCCGUUUCCCACGCUGGCCGAGGCCCAGGAAAUGGCCUCGCAGGGCGCCCUGGUGGCCCACAGUCGCAACAUUGAGCGACUGCCCCACGCGGCCAAUGCG---GCCAUUCUACAA
(((((......(((.((((((((((........)))))).((((....))))..))))..(((((((........)))))))......)))......)))---)).......... ( -50.80)
>consensus
GCCGUUUCCCACGCUGGCCGAGGCCCAGGAGAUGGCCAACCAGGGAGCACUGGUGGCCCACAGUCGCAACAUUGAACGACUGCCCCAAGCGGCCAAUGCG___GCCAUCCUACAA
(((((((((...(((......)))...)))))))))..........(((.((((.((...((((((..........))))))......)).)))).)))................ (-27.22 = -28.33 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:23 2006