Locus 2849

Sequence ID 3L_DroMel_CAF1
Location 8,132,402 – 8,132,508
Length 106
Max. P 0.693988
window4452

overview

Window 2

Location 8,132,402 – 8,132,508
Length 106
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 80.38
Mean single sequence MFE -23.95
Consensus MFE -14.58
Energy contribution -15.14
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.88
Structure conservation index 0.61
SVM decision value 0.34
SVM RNA-class probability 0.693988
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8132402 106 + 23771897
UCUUACCCCAUAAA--------GCCUACUCACUAAUCUUAGAUGACCUGUUAAGAUCCCAACACCCACAUUUCCUAUAAAGCCCUUAAUGGGAAUGUUAAUCCGGUGAAGGGCG
..............--------((((..(((((.(((((((........)))))))..........((((((((...............))))))))......))))).)))). ( -22.06)
>DroSec_CAF1 29058 106 + 1
UCUUACCCUAUAAA--------GCCUACUCACUAAUCUUAGAUGAUCUAUAAUGAUCCCAACACCCACAUUUCCUAUAAAACCCUUGAUGGGAAUGCUAAUCCGGUGAAGGGCG
..............--------((((..(((((....((((..((((......))))..........(((((((...............)))))))))))...))))).)))). ( -22.16)
>DroSim_CAF1 29849 106 + 1
UCUUACCCUAUAAA--------GCCUACUCACUAAUCUUAGAUGAUCUAUUAUGAUCCCAACACCCACAUUUCCUAUAAAACCCUUGAUGGGAAUGCUAAUCCGGUGAAGGGCG
..............--------((((..(((((....((((..((((......))))..........(((((((...............)))))))))))...))))).)))). ( -22.16)
>DroEre_CAF1 31227 92 + 1
----------------------ACCUACCCACCUAUCUCAGAAGAUCUGUUAUUAUCCCAACACCCACAUUUCCUAUGAGACCUUUGCCGGGGAUGCUAAUCCGGUGAAGGGCG
----------------------.............(((((...((..(((................)))..))...)))))((((..(((((........)))))..))))... ( -23.89)
>DroYak_CAF1 30070 113 + 1
U-UCGCCCUAUAAAACCUAUAAACCUACCCACAUAUCUCCGGUGAUCUGUUAUGAUCCCAACACCCACAUUUCCUAUGAGACCUCUGCUGGGGAUGCUAAUCCGGUGAAGGGCG
.-.((((((...............................((.((((......))))))..((((................((......))((((....)))))))).)))))) ( -29.50)
>consensus
UCUUACCCUAUAAA________GCCUACUCACUAAUCUUAGAUGAUCUGUUAUGAUCCCAACACCCACAUUUCCUAUAAAACCCUUGAUGGGAAUGCUAAUCCGGUGAAGGGCG
......................((((.................((((......))))....((((..(((((((...............))))))).......))))..)))). (-14.58 = -15.14 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:18 2006