Locus 2848

Sequence ID 3L_DroMel_CAF1
Location 8,128,355 – 8,128,464
Length 109
Max. P 0.554266
window4451

overview

Window 1

Location 8,128,355 – 8,128,464
Length 109
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 79.34
Mean single sequence MFE -22.72
Consensus MFE -12.39
Energy contribution -13.08
Covariance contribution 0.70
Combinations/Pair 1.18
Mean z-score -1.81
Structure conservation index 0.55
SVM decision value 0.04
SVM RNA-class probability 0.554266
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8128355 109 + 23771897
UAUGUAUAAGCACUCUGAAGAAUUCUUUAAAAGGCCCAUUAAGAUUUCAUUUUAUAUGGCACUUC-CUUAAGUGCCACUUUUGCAAUGGCA--AUGUAUUGUGGCAAUUUCU
.........((....(((((....)))))....))......(((((((((..((((((((((((.-...))))))))...((((....)))--)))))..)))).))))).. ( -22.60)
>DroSec_CAF1 25100 105 + 1
U----AUAAGCACUCUGAAGAAUUCUUUAAAAGGGCCAUUAAAAUUUCAGUUUUUAUGGCACUUC-CUUAAGUGCCACUUCUGCAAUGGCA--AUGUAUUGUGGCAAUUUCU
.----.((((.....(((((....))))).(((.(((((.(((((....))))).))))).))).-))))..((((((...((((......--.))))..))))))...... ( -24.20)
>DroSim_CAF1 25853 105 + 1
U----AUAAGCACUCUGAAGAAUUCUUAAAAAGGGCCAUUAAAAUUUCAGUUUAUAUGGCACUUC-CUUAAGUGCCACUUCUGCAAUGGCA--AUGUAUUGUGGCAAUUUCU
.----...........((((....(((((..((((((((..((((....))))..))))).))).-.)))))((((((...((((......--.))))..)))))).)))). ( -23.50)
>DroEre_CAF1 27214 104 + 1
-----AUAAGCACUCUGAAGAACUCUUUAAAAAGGCCAUUAGGGUUUCAGUUUAUAUGGCACUUC-CUUAAGUGGCACUUCUGCAAUGGAA--GUAUAUUGUGGCAACUUCU
-----...........((((...........(((((((((((((.....(((.....)))....)-))).)))))).)))(..(((((...--...)))))..)...)))). ( -21.80)
>DroYak_CAF1 26031 104 + 1
-----AUGAGCACUCUGAAGAACUUUUUAAAAAGGCCAUUAAGAUUUCAGUUUAUAUGGCACUUC-CUUAAGUGCCACUUCUGCAAUGGAA--AUAUAUUGUGGCAACUUCU
-----...........((((..((((....))))(((((....(((((.((..(..((((((((.-...))))))))..)..))....)))--)).....)))))..)))). ( -26.50)
>DroPer_CAF1 27948 94 + 1
-------AAGUACCC-AAAGUACCCCCAAAAAAGUAC---AAAAUUUCAGUUUAUUUUGCAUUUAAAUUAAGUGC-AC------AAAUACUCUGUUUUUUAUUGGAAUUUCU
-------......((-((.((((..........))))---((((...(((..(((((((((((((...)))))))-).------)))))..)))..)))).))))....... ( -17.70)
>consensus
_____AUAAGCACUCUGAAGAACUCUUUAAAAAGGCCAUUAAAAUUUCAGUUUAUAUGGCACUUC_CUUAAGUGCCACUUCUGCAAUGGCA__AUGUAUUGUGGCAAUUUCU
..................................(((...................((((((((.....)))))))).....((((((........)))))))))....... (-12.39 = -13.08 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:17 2006