Locus 2845

Sequence ID 3L_DroMel_CAF1
Location 8,113,019 – 8,113,116
Length 97
Max. P 0.860102
window4444

overview

Window 4

Location 8,113,019 – 8,113,116
Length 97
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 77.57
Mean single sequence MFE -21.91
Consensus MFE -11.38
Energy contribution -11.32
Covariance contribution -0.05
Combinations/Pair 1.18
Mean z-score -2.15
Structure conservation index 0.52
SVM decision value 0.82
SVM RNA-class probability 0.860102
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8113019 97 - 23771897
AAAGUAC----CACA---------AAA-UAU-CCACUUACCAUUUAGAAACAUCACUUUGGUAAGGAAAGCCUCCAAGGUGGCCCCUCUACCCUUUUCGCCUAUCAAAUGCA
...(((.----....---------...-...-...(((((((...((........)).)))))))....(((.(....).))).........................))). ( -15.00)
>DroPse_CAF1 19005 103 - 1
AAAUUACGGCUCAUA---------AACCCAUGCCACCUACCAUUCAAAAACAUUACUUUGGUGAGAAACGCCUCAAGGGUGGCACCGCGUCCGCGUUCGCCAAUCAAAUGAA
.......(((.....---------......((((((((((((................))))(((......)))..)))))))).(((....)))...)))........... ( -27.79)
>DroGri_CAF1 10368 107 - 1
AAAAUAU---UCAUAUACAUUUUGCAA-UAU-GCAUUUACCAUUUAGAAACAUAACCUUGGUGAGGAACGCCUCCAAAGUGGCGCCACGUCCGCGUUCGCCAAUCAAAUGCA
...((((---(((.........)).))-)))-((((((((((.(((......)))...))))((((....)))).....(((((..(((....))).)))))...)))))). ( -22.60)
>DroEre_CAF1 10007 96 - 1
AAAG-UA----CACA---------AGG-UAU-CCACUUACCAUUUAGAAACAUCACUUUGGUAAGGAAAGCCUCCAAGGUGGCACCUCUACCCCUUUCGCCUAUCAAAUGCA
...(-((----....---------.((-((.-.....))))...((((....(((((((((..(((....))))))))))))....))))..................))). ( -20.40)
>DroYak_CAF1 10072 96 - 1
AAAU-AU----CACA---------AAA-GAU-CCACUUACCAUUUAGAAACAUCACUUUGGUAAGGAAAGCCUCCAAGGUGGCCCCUCUACCUCUUUCGCCUAUCAAAUGCA
....-..----....---------...-(((-...(((((((...((........)).)))))))(((((......((((((.....)))))))))))....)))....... ( -17.90)
>DroPer_CAF1 11875 103 - 1
AAAUUACGGCUCAUA---------AACCCAUGCCACCUACCAUUCAAAAACAUUACUUUGGUGAGAAACGCCUCAAGGGUGGCACCGCGUCCGCGUUCGCCAAUCAAAUGAA
.......(((.....---------......((((((((((((................))))(((......)))..)))))))).(((....)))...)))........... ( -27.79)
>consensus
AAAUUAC____CACA_________AAA_UAU_CCACUUACCAUUUAGAAACAUCACUUUGGUAAGGAAAGCCUCCAAGGUGGCACCUCGACCGCGUUCGCCAAUCAAAUGCA
...................................(((((((................)))))))....(((.(....).)))............................. (-11.38 = -11.32 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:10 2006