Locus 2844

Sequence ID 3L_DroMel_CAF1
Location 8,111,082 – 8,111,179
Length 97
Max. P 0.789339
window4443

overview

Window 3

Location 8,111,082 – 8,111,179
Length 97
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.11
Mean single sequence MFE -35.38
Consensus MFE -21.97
Energy contribution -23.33
Covariance contribution 1.36
Combinations/Pair 1.21
Mean z-score -1.79
Structure conservation index 0.62
SVM decision value 0.58
SVM RNA-class probability 0.789339
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8111082 97 - 23771897
AACGUA-ACAGUUGGUCAGGAUGAGCAGCGUGUGGUACCUGGAACAUGUGACCACUGGCGCACGGCUCAUCCUGCACAACGGCACUAAUUUGAUGGGU
...((.-...((((..((((((((((.(((((((((..(........)..)))))..))))...))))))))))..)))).))............... ( -37.30)
>DroSec_CAF1 7984 98 - 1
AACGGAAACGGUUGUUCAGGAUGAGCGGCGUGUGGUAUUUAGAACAUGUGACCACUGGCGCACGCCUCAUCCUGCACAACGGCACUAAUUCAGUGGGU
..((....))(((((.((((((((((((((((((((...((.....))..)))))..)))).)).))))))))).)))))..((((.....))))... ( -43.10)
>DroSim_CAF1 8049 97 - 1
AACGGA-ACGGUUGUUCAGGAUGAGCGGCGUGUGGUAUCUAGAACAUGUGACCACUGGCGCACGCCUCAUCCUGCACAACGGCACUAAUUCGGUUGGU
(((.((-((.(((((.((((((((((((((((((((..(........)..)))))..)))).)).))))))))).))))).)......))).)))... ( -39.20)
>DroEre_CAF1 8049 97 - 1
GACGGA-AGGGUUGGCCGAGAUGAGCAGCGUGUGGUACCUGGAACAUGUGACCACUGGCGCCCGGCUCAUUCUGCACAAUGGGACUAAUUUGGUGGGU
..(...-.).((((((.(((.(((((.(((((((((..(........)..)))))..))))...)))))))).)).)))).................. ( -28.20)
>DroYak_CAF1 8113 97 - 1
GACGGC-ACGGUUGGCCAGGAUGAGCAGCGUGUGGUACCUGGAACAUGUGACCACUGGCGCCAGGCUUAUUCUGCACAAUGGGACUAAUUUGGUGGGU
...((.-.(.((((..((((((((((.(((((((((..(........)..)))))..))))...))))))))))..)))).)..))............ ( -33.20)
>DroAna_CAF1 8147 94 - 1
GCCUCA-AACGCUUGCCAAGAUGAGCAGC---UGGUAUUUGGAGCAUGUUACGACCCGGGACAAGAUUAUCCUCCACAAGGGGGAUAAUGUUAUGGGC
((..((-((..((((((.....).)))..---.))..))))..)).........((((.((((...(((((((((....))))))))))))).)))). ( -31.30)
>consensus
AACGGA_ACGGUUGGCCAGGAUGAGCAGCGUGUGGUACCUGGAACAUGUGACCACUGGCGCACGGCUCAUCCUGCACAACGGCACUAAUUUGGUGGGU
..........((((..((((((((((.(((((((((..(........)..)))))..))))...))))))))))..)))).................. (-21.97 = -23.33 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:09 2006