Locus 2843

Sequence ID 3L_DroMel_CAF1
Location 8,108,187 – 8,108,283
Length 96
Max. P 0.798351
window4442

overview

Window 2

Location 8,108,187 – 8,108,283
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 76.96
Mean single sequence MFE -26.45
Consensus MFE -17.34
Energy contribution -19.07
Covariance contribution 1.72
Combinations/Pair 1.33
Mean z-score -1.47
Structure conservation index 0.66
SVM decision value 0.61
SVM RNA-class probability 0.798351
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8108187 96 - 23771897
-GUGCAUUUCAACGAUGAUGUGAAAGUACACUGUAUCGAAAGGGUUAAGGGAGCCAGUUCUAAGGUUCAGGGCCGCAAGGAGUGCAUAAAGCUCCGC
-(((((((((..(((((..(((......)))..)))))....((((....(((((........)))))..))))....))))))))).......... ( -29.20)
>DroVir_CAF1 5697 97 - 1
UGUCCGUUUCAACGACAAUAUACAAAUCAAAUUGAUUGAACGGGUUGAAGGUGCUUAUAAAAAAGUGGCUGGUAUUAAGGAUACCAAGAAGGUAACA
...(((((.(((...((((...........)))).))))))))((((.((.(((((......))))).))((((((...)))))).......)))). ( -16.70)
>DroSec_CAF1 5164 96 - 1
-GUGCAUUUCAAAGAUGAUGUGAAGGUACACUACAUCGAAAGGGUCAAGGGAGCUAGUUCUAAGGUUCAGGGACGCAAGGAGUGCAUAAAGCUCCGU
-(((((((((...((((..(((......)))..))))....(.(((....(((((........)))))...))).)..))))))))).......... ( -27.60)
>DroSim_CAF1 5169 96 - 1
-GUCCAUUUCAACGAUGAUGUGAAGGUACACUGCAUCGAAAGGGUCAAGGGAGCUAGUUCUAAGGUUCAGGGACGCAAGGAGUGCAUAAAGCUCCGC
-((((.......(((((..(((......)))..)))))...(..((...((((....))))..))..)..))))....(((((.......))))).. ( -27.60)
>DroEre_CAF1 5153 96 - 1
-GUGCACUUCAACGAUGAUGUCAAAAUACACUUAAUCGAAAGAGUCAAGGGAGCCAGCUCUCAGGUACAGGGACGCAAGGAGUGCAUAAAGCUCUAC
-(((((((((.....((.((((....(((......((....)).....(((((....)))))..)))....)))))).))))))))).......... ( -26.50)
>DroYak_CAF1 5166 96 - 1
-GUGCACUUCAACGAUGAUGUCAAAGUACACUACAUCGAAAGGGUCAAGGGAGCCAGCUCUCAGGUUCAGGGACGCAAGGAGUGCAUGAAACUCUUC
-(((((((((..(((((.(((......)))...)))))...(.(((....(((((........)))))...))).)..))))))))).......... ( -31.10)
>consensus
_GUGCAUUUCAACGAUGAUGUGAAAGUACACUACAUCGAAAGGGUCAAGGGAGCCAGUUCUAAGGUUCAGGGACGCAAGGAGUGCAUAAAGCUCCGC
.(((((((((..(((((.((((....))))...)))))...(.(((....(((((........)))))...))).)..))))))))).......... (-17.34 = -19.07 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:08 2006