Locus 2842

Sequence ID 3L_DroMel_CAF1
Location 8,102,582 – 8,102,681
Length 99
Max. P 0.552203
window4441

overview

Window 1

Location 8,102,582 – 8,102,681
Length 99
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 82.69
Mean single sequence MFE -33.17
Consensus MFE -23.34
Energy contribution -22.18
Covariance contribution -1.16
Combinations/Pair 1.39
Mean z-score -1.55
Structure conservation index 0.70
SVM decision value 0.04
SVM RNA-class probability 0.552203
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8102582 99 - 23771897
--GUCUGGUCAUGGUAAUGGUUUCGGCUCUGGGUUCUUGGCCCAGUGCUUCCCUAAUUGGCGUAGUCCA-UCUAAUUGGAU-UUGCUGGUCAUAAUGGCGCUA
--.....(((((......((....(((.((((((.....)))))).))).))...((..(((.((((((-......)))))-))))..))....))))).... ( -32.30)
>DroSec_CAF1 2848 101 - 1
AAGUCUGGUCAUGGUAAUGGUUCCGGCUCUGGGUUCUUGGCCCAGCGCUUCCCUAAUUGGCGUCGUCCA-UCUAAUUGGAU-UUGCUGGUCUUAAUGGCGCUA
.((.((((((((....))))..))))))..((((.....))))((((((......((..(((..(((((-......)))))-.)))..))......)))))). ( -33.30)
>DroSim_CAF1 2832 101 - 1
AAGUCUGGUCAUGGUAAUGGUUCCGGCUCUGGGUUCUUGGCCCAGUGCUUCCCUAAUUGGCGUCGUCCA-UCUAAUUGGAU-UUGCUGGUCGUAAUGGCGCUA
.((.((((((((....))))..))))))..((((.....))))((((((......((..(((..(((((-......)))))-.)))..))......)))))). ( -31.40)
>DroEre_CAF1 2839 102 - 1
AAGCCUGGUCAUGGUAAUGGUUCCGGCUCUGGGUUUUUGGCCCAGUGCUUCCGUAAUUGGCGUCGUCCA-UCUAAUUGGAUUUUGCUGAUAAUAAUGGCGCUA
.(((...(((((....((((....(((.((((((.....)))))).))).)))).((..(((..(((((-......)))))..)))..))....)))))))). ( -36.40)
>DroYak_CAF1 2856 101 - 1
AAGUCUGGUCAUGGUAAUAGUUCCGGCUCUGGGUUCUUGGCCCAGUGCUUCCCUAAUUGGCGUCGUCCA-UCUAAUUGGAU-UUGCUGGUAAUGAUGGCGCUA
.(((.(.(((((.....(((....(((.((((((.....)))))).)))...)))((..(((..(((((-......)))))-.)))..)).))))).).))). ( -33.30)
>DroPer_CAF1 6335 99 - 1
CAUACGGGGC---GCAACGGGGCGACCUCUCUCUUAAGGGGUGGGCGCUUCCGUAAUGGCUGGAAUCCACUAUAAUUGGAU-UUGCACGAAAUAAUGGCGUUA
.......(((---((.((((((((.(((..(((....)))..)))))).)))))....((..(((((((.......)))))-))))...........))))). ( -32.30)
>consensus
AAGUCUGGUCAUGGUAAUGGUUCCGGCUCUGGGUUCUUGGCCCAGUGCUUCCCUAAUUGGCGUCGUCCA_UCUAAUUGGAU_UUGCUGGUAAUAAUGGCGCUA
......((((..((........))))))..((((.....))))((((((......(((((((..(((((.......)))))..)))))))......)))))). (-23.34 = -22.18 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:07 2006