Locus 2841

Sequence ID 3L_DroMel_CAF1
Location 8,101,166 – 8,101,261
Length 95
Max. P 0.916654
window4440

overview

Window 0

Location 8,101,166 – 8,101,261
Length 95
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 74.88
Mean single sequence MFE -27.53
Consensus MFE -18.67
Energy contribution -17.48
Covariance contribution -1.19
Combinations/Pair 1.43
Mean z-score -1.53
Structure conservation index 0.68
SVM decision value 1.11
SVM RNA-class probability 0.916654
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8101166 95 - 23771897
-----AACACAUACCUUUUAGUACUGAUUAUGGCGUCAACUUCUUUAAGAAGUUCGAUUUGGUGCUCAGCGCCUUGGACAACAGGGCCGCCAGGAAUCAU
-----...................(((((.(((((((((((((.....)))))).)).............((((((.....)))))))))))..))))). ( -27.30)
>DroVir_CAF1 3720 97 - 1
CCUU---CUUUUAAUUUGCAGCACUGACUACGGCGUUAAUUUCUUCAAGAAAUUCGACGUGGUGCUCAGCGCCUUGGACAACAGAGCGGCGCGAAAUCAU
....---.......(((((.((.((((.(((.(((((((((((.....)))))).))))).))).))))(((.(((.....))).))))))))))..... ( -30.30)
>DroGri_CAF1 1410 97 - 1
UUAU---UGUUACAUUUGUAGAACGGAUUACGGUGUCAAUUUCUUUAAGAAAUUUGAUGUUGUGCUAAGCGCUUUGGACAAUCGAGCGGCUCGCAACCAU
....---..((((....))))...((...((((..((((((((.....)))).))))..))))((..(((((((.........)))).))).))..)).. ( -19.10)
>DroEre_CAF1 1413 99 - 1
C-AACUACAAAUACGUUUUAGUACUGAUUAUGGCGUCAACUUCUUUAAGAAGUUCGAUUUGGUGCUCAGCGCGUUGGACAACAGGGCCGCUAGGAACCAU
.-...........(((..((((....))))..)))((((((((.....)))))).))..((((.(..(((((.(((.....))).).))))..).)))). ( -24.70)
>DroYak_CAF1 1417 99 - 1
C-AACAACAACACCUUUUCAGUACUGACUAUGGUGUCAACUUCUUUAAGAAGUUCGAUUUGGUGCUCAGCGCCUUGGACAACAGGGCCGCUAGGAACCAU
.-........((((...(((....)))....))))((((((((.....)))))).))..((((.(..(((((((((.....))))).))))..).)))). ( -31.60)
>DroMoj_CAF1 1382 97 - 1
UAUC---UGUUUGCUUUGCAGCACUGACUACGGCGUUAAUUUCUUCAAGAAGUUUGAUGUGGUGCUCAGUGCGUUGGACAAUCGCGCGGCGCGAAACCAC
....---..(((((.((((.(((((((.(((.(((((((((((.....)))).))))))).))).)))))))(.....)......)))).)))))..... ( -32.20)
>consensus
C_AA___CAUUUACUUUGCAGUACUGACUACGGCGUCAACUUCUUUAAGAAGUUCGAUGUGGUGCUCAGCGCCUUGGACAACAGGGCCGCUAGGAACCAU
...................(((((((((......)))((((((.....))))))......))))))..((((((((.....)))))).)).......... (-18.67 = -17.48 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:06 2006