| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 815,446 – 815,549 |
| Length | 103 |
| Max. P | 0.820865 |
| Location | 815,446 – 815,549 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.82 |
| Mean single sequence MFE | -26.45 |
| Consensus MFE | -17.82 |
| Energy contribution | -16.38 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 815446 103 - 23771897 AGACCCUAGAAGGCGCUUUAAUUCACAGGUUUAGUGGAUC--CAC-ACCACGAAC-A-CUGACUGUACUUAGUGCCAGAUAAAUC---GU-GAUCACUGAACCAUUGGUGUU .(((((..(((..........)))...(((((((((.(((--.((-........(-(-((((......))))))...((....))---))-))))))))))))...)).))) ( -22.90) >DroPse_CAF1 186296 104 - 1 --UCCCUAUUA-GCGCCUUAAUUCUCAGGGUUUGUGGAUUAACCC-ACCAUCGAC-ACCUGUCUGUACUUGGCGCCAGAGAAAUU---GUCGAUCACUGAACCAUUGGUGUU --........(-(((((.......((((.....((((......))-)).((((((-(..(.((((..........)))).)...)---))))))..))))......)))))) ( -25.32) >DroGri_CAF1 218826 97 - 1 ---C---ACUUGGCGCUUUAAUUC-CAGUGUCUGUGGCUA-AUAAAUCCAUGGAC-A-CUGCUUGUACUUAGCGCUAGAUAAAU----GU-GACCACUGAACCAUUGGUGUU ---(---((((((((((.((....-((((((((((((...-......))))))))-)-)))....))...))))))))......----))-)..(((..(....)..))).. ( -30.70) >DroWil_CAF1 202045 104 - 1 --UCAAUAUUUUGCACUUCAAUUCUCAGAGACUGUGGAUU--C-C-ACCAUAGUCUA-CUGACUGUACUUAGUGCUAGAUAAAUUUGAUU-GACCACUGAACCAUUGGUGUU --(((((((((.(((((...((..(((((((((((((...--.-.-.))))))))).-))))..))....))))).)))))...))))..-...(((..(....)..))).. ( -31.60) >DroYak_CAF1 178887 103 - 1 AGAUCGUAGCAGGCGCUUUAAUUCACAGGUUUAGUGGAUC--CAC-ACCACGAAC-A-CUGAUUGUACUUAGUGCCAGAUAAAUU---GU-GAUCACUGAACCAUUGGUGUU .((....(((....))).....))...(((((((((.(((--.((-(.......(-(-((((......))))))..........)---))-))))))))))))......... ( -22.83) >DroPer_CAF1 192446 104 - 1 --UCCCUAUUA-GCGCCUUAAUUCUCAGGGUUUGUGGAUUAACCC-ACCAUCGAC-ACCUGUCUGUACUUGGCGCCAGAGAAAUU---GUCGAUCACUGAACCAUUGGUGUU --........(-(((((.......((((.....((((......))-)).((((((-(..(.((((..........)))).)...)---))))))..))))......)))))) ( -25.32) >consensus __UCCCUAUUAGGCGCUUUAAUUCUCAGGGUUUGUGGAUU__CAC_ACCAUGGAC_A_CUGACUGUACUUAGCGCCAGAUAAAUU___GU_GAUCACUGAACCAUUGGUGUU ............(((((........(((.(((.((((..........)))).)))...))).........)))))...................(((..(....)..))).. (-17.82 = -16.38 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:18 2006