Locus 2839

Sequence ID 3L_DroMel_CAF1
Location 8,093,221 – 8,093,341
Length 120
Max. P 0.537161
window4438

overview

Window 8

Location 8,093,221 – 8,093,341
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.94
Mean single sequence MFE -36.08
Consensus MFE -24.12
Energy contribution -23.10
Covariance contribution -1.02
Combinations/Pair 1.48
Mean z-score -1.49
Structure conservation index 0.67
SVM decision value 0.01
SVM RNA-class probability 0.537161
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8093221 120 - 23771897
UCCCUCCUCAGAUUCUAGGACCUGGCUGAAGGUGGUGGCCAGGUGCUGGCAGAUCUCGGUGGCCACGGGCAGCAAUUGCUCGGUGAAGGUGCACACGAUCUUUUGCAUAACGUUUGUUAG
..((.((..(((((((((.((((((((.........)))))))).))))..))))).)).))..(((....((((..(.((((((......))).))).)..))))....)))....... ( -40.50)
>DroVir_CAF1 4406 120 - 1
UCCCUCCUCCGAUUCCAGCACUUGACUAAAUGUUGUUGCCAAAUGCUGACAAAUUUCCGUGGCAACCGGCAACAGUUGCUCCGUAAAUGUGCACACAAUCUUCUGCAUGACAUUUGUCAA
................((((.(((.(...........).))).))))(((((((.((((..(((((.(....).)))))..)).....(((((..........))))))).))))))).. ( -28.10)
>DroGri_CAF1 4446 120 - 1
GCCCUCCUCCGAUUCCAGCACUUGACUGAAUGUCGUUGCCAAGUGCUGGCAUAUUUCUGUGGCAACCGGCAGCAGUUGCUCCGUAAAUGUGCAAACAAUCUUCUGCAUGACAUUUGUCAA
((.............(((((((((.(...........).)))))))))((((((((.((..(((((........)))))..)).))))))))............)).((((....)))). ( -36.20)
>DroWil_CAF1 4663 120 - 1
ACCCUCCUCAGAUUCGAGAACUUGACUGAAUGUCGUUGCCAAAUGCUGACAGAUUUCUGUAGCGACAGGCAACAAUUGUUCGGUAAAUGUGCAUACGAUCUUUUGCAUAACAUUCGUUAA
......(((......)))....((((.((((((.((((((...(((((.(((....))))))))...))))))..............((((((..........)))))))))))))))). ( -33.30)
>DroMoj_CAF1 4377 120 - 1
UCCCUCUUCAGAUUCUAGCACUUGACUAAAUGUUGUGGCUAGAUGUUGACAAAUUUCUGUUGCAACUGGCAGCAGUUGCUCCGUGAAUGUGCAGACAAUCUUCUGCAUGACGUUUGUCAA
.............((((((...((((.....))))..))))))..(((((((((.((.(..(((((((....)))))))..)......(((((((......))))))))).))))))))) ( -38.80)
>DroAna_CAF1 4294 120 - 1
UCCCUCCUCGGACUCCAACACCUGGCUGAAGGUGGUUGCCAAGUGCUGGCAAAUCUCGGUGGCGACCGGCAACAGUUGCUCCGUAAAGGUGCACACGAUCUUCUGCAUCACGUUGGUCAG
(((......)))..(((((.....((.((((((.(((((((.....))))).(((((((.((((((.(....).)))))))))...))))....)).)))))).)).....))))).... ( -39.60)
>consensus
UCCCUCCUCAGAUUCCAGCACUUGACUGAAUGUCGUUGCCAAAUGCUGACAAAUUUCUGUGGCAACCGGCAACAGUUGCUCCGUAAAUGUGCACACAAUCUUCUGCAUGACAUUUGUCAA
.....................(((((.(((((((((((((...((((.((........))))))...))))))...............(((((..........))))))))))))))))) (-24.12 = -23.10 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:04 2006