Locus 2837

Sequence ID 3L_DroMel_CAF1
Location 8,071,795 – 8,071,895
Length 100
Max. P 0.745416
window4434

overview

Window 4

Location 8,071,795 – 8,071,895
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 88.20
Mean single sequence MFE -27.46
Consensus MFE -19.90
Energy contribution -21.34
Covariance contribution 1.44
Combinations/Pair 1.07
Mean z-score -1.99
Structure conservation index 0.72
SVM decision value 0.46
SVM RNA-class probability 0.745416
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8071795 100 - 23771897
UUUGCCUUGAAAAAGGUUCGGCAAGCAUUACUUCAUUGAUCAGUUCUUAGAUUGGUUAUGAAAAGCCAUUGACCCUAGGUCAGUAAACAUGGCGAUGCUC
...(((((....)))))......((((((..(((((.((((((((....)))))))))))))..((((((((((...)))))......))))))))))). ( -30.70)
>DroSec_CAF1 19205 100 - 1
UUUGCCUUGAAAAAGGUUCGGCAAGCGUUACUUCAUUGAUCAGUUCUUAGAUUGGUUAUUAAAAGCCAUUGACCCUAGGUCAGUAAACUUGGCGAUGCUC
...(((((....)))))(((.((((..((((.....(((((((((....)))))))))...........(((((...))))))))).)))).)))..... ( -27.30)
>DroSim_CAF1 22033 100 - 1
UUUGCCUUGAAAAAGGUUCGGCAAGCGUUACUUCAUUGAUCAGUUCUUAGAUUGGUUAUGAAAAGCCAUUGACCCUAGGUCAGUAAACCUGGCGAUGCUC
...(((((....)))))......((((((..(((((.((((((((....)))))))))))))..((((((((((...))))))......)))))))))). ( -29.80)
>DroEre_CAF1 18544 100 - 1
UUUGCCUUAAUAAAGGUUCAGUAGGCAUUAGUUCACUGAUCAGUCCUACAAAUGGUUAUAGAAAGCCAUUGCCCCUAGGUCAGUAAACUUGGCGAUGCUC
...(((((....)))))..((((.((...((((.(((((((((.......(((((((......)))))))....)).))))))).))))..))..)))). ( -27.10)
>DroYak_CAF1 18734 100 - 1
UUUGCCACUAAAAAGGUUCAGCAAACAUUACUUCAUUGAUCAGACCUACAAAUGGUUUUAGAAAGCCAUUGACCCUAGGUCAGUAAACUUGGCGAUGCGC
.((((((.......(((.(((..((......))..)))))).((((((..((((((((....)))))))).....))))))........))))))..... ( -22.40)
>consensus
UUUGCCUUGAAAAAGGUUCGGCAAGCAUUACUUCAUUGAUCAGUUCUUAGAUUGGUUAUAAAAAGCCAUUGACCCUAGGUCAGUAAACUUGGCGAUGCUC
...(((((....)))))......((((((.......((((((((......))))))))......((((((((((...))))))......)))))))))). (-19.90 = -21.34 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:00 2006