Locus 2836

Sequence ID 3L_DroMel_CAF1
Location 8,064,947 – 8,065,039
Length 92
Max. P 0.571948
window4433

overview

Window 3

Location 8,064,947 – 8,065,039
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.07
Mean single sequence MFE -24.97
Consensus MFE -18.34
Energy contribution -18.57
Covariance contribution 0.23
Combinations/Pair 1.29
Mean z-score -1.13
Structure conservation index 0.73
SVM decision value 0.08
SVM RNA-class probability 0.571948
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8064947 92 - 23771897
UGAAGCGGCACUUAAUUUCUGGAAGCAGCCCAGAAGGUUGAGCUACCUGG---CUCGCAAUCAGGUAAUA---GCAUAUUGGUUUCUCUCUAUAUUCC
.(((((.((.((((((((((((.......)))))).)))))).(((((((---.......)))))))...---))......)))))............ ( -22.60)
>DroSec_CAF1 11342 92 - 1
UGAAGCGGCUCUUAAUUUCUGGAAGCAGCCCAGAAAGUUGAGCUACCUGG---CUCGCAAUCAGGUAAUU---GGAUAUUGGUUUCUCUCUAUAUUCC
.((((((((((....(((((((.......)))))))...)))))((((((---.......))))))....---........)))))............ ( -26.70)
>DroSim_CAF1 14825 92 - 1
UGAAGCGGCACUUAAUUUCUGGAAGCAGCCCAGAAGGUUGAGCUACCUGG---CUCGCAAUCAGGUAAUG---GGAUAUUGGUUUCUCUCUAUAUUCC
..........((((((((((((.......)))))).)))))).(((((((---.......)))))))..(---((((((.((......)).))))))) ( -22.80)
>DroEre_CAF1 11746 92 - 1
UGAAGCGGCACUUAAUUUCUGGAAGCAGCCCAGAAGGUUGAGCUACCUGG---CCCGUAAUCAGGUAAGA---CGAAAUUGGUUUCUGUCUACAAACU
..........((((((((((((.......)))))).)))))).(((((((---.......)))))))(((---(((((....)))).))))....... ( -22.90)
>DroYak_CAF1 11608 95 - 1
CGAAGCCGCACUUAAUUUCUGGAAGCAGCCCAGAAGGUUAAGCUACCUAG---CUCGUAAUCAGGUAAGAUUACGAUAUUGGUUUCUUCCUAUAGACC
.((((((((........(((((.......)))))((((......)))).)---)((((((((......))))))))....))))))............ ( -29.00)
>DroAna_CAF1 35566 92 - 1
UGAGGCAGCCCUGAACUUCUGGAAGCAGCCCAGGCGACUGGGAUACCUAGGGUCGCGUAAUCAGGUGAAA---AAA--UC-CAUUCCAUCCACAAAAU
(((.((.((((((.....(((....)))(((((....))))).....)))))).))....)))((.(((.---...--..-..)))...))....... ( -25.80)
>consensus
UGAAGCGGCACUUAAUUUCUGGAAGCAGCCCAGAAGGUUGAGCUACCUGG___CUCGCAAUCAGGUAAUA___GGAUAUUGGUUUCUCUCUAUAUACC
.(((((....((((((((((((.......))))))).))))).(((((((..........)))))))..............)))))............ (-18.34 = -18.57 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:59 2006