| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,062,490 – 8,062,610 |
| Length | 120 |
| Max. P | 0.866437 |
| Location | 8,062,490 – 8,062,610 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.00 |
| Mean single sequence MFE | -44.27 |
| Consensus MFE | -19.40 |
| Energy contribution | -20.41 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8062490 120 + 23771897 AGAACGCCUCGCAUAUGCAAGCUCUGGUAAUGGGAUUACACGACCCAUGACCGGAGCAAUCACUCUGGCAAACAGAGGUGCGAAUAUCCACUGCAAAUGCGCCCAGUAUAGAUGCAUCCU ...((....(((((.((((.((((((((.(((((.........))))).)))))))).....(((((.....)))))(((.(.....)))))))).)))))....))............. ( -42.20) >DroVir_CAF1 21851 120 + 1 AGAAUGCCUCGCAAAUGCAAGCUCUCGUCGAGGGUUCGCAUCUGCCAUGUCCAGAGCAAUUAUUCUGGCACACGGUGGUGCGAAUGUCCACAUAAAGUGCACCUAGAAUUGAGUCAUCCU ..........((....))..((((...((.((((((((((((.(((.(((((((((......)))))).))).))))))))))))...(((.....)))..))).))...))))...... ( -38.90) >DroGri_CAF1 20166 120 + 1 AGAAGGCUUCGCAGAUGCAGGCUCUUGUCGCUGGAUUGCAUCUGCCAUGGCCGGAGCAAUUGUUUUGGCACACUGUGGUGCGUAUGUCCACAUAGAGUGCACCUAAUAUGGAGGCGUCCU .((..(((((((((((((((..((........)).))))))))))((((((((((((....)))))))).......((((((((((....))))...))))))...))))))))).)).. ( -46.50) >DroWil_CAF1 24096 120 + 1 AAAAUGCCUCACAUAUGCAGGCUCUGGUUGUGGGAUUACAUUGACCAUGUCCAGAGCAAUUAUUCUGACAGACUGUCGCACGUAUAUCCACAAAUAGGGCACCCAAGAUGGAGGCAUCUU ...(((((((.(((......((((((.(((((((..(((..((((..((((.((((......))))))))....))))...)))..))))))).)))))).......))))))))))... ( -41.72) >DroMoj_CAF1 19754 120 + 1 AGAAGGCCUCGCAGACGCACGCUCUCGUCGAGGGAUUGCAUCGGCCAUGACCCGAGCAAUUGUUCUGACAGACUGUGGUGCGUAUGUCCACAUAGAGUGUGCCCAGUAUGGAGGCAUCCU .....(((((.((.(((((((((((.((((((.((((((.((((.......)))))))))).))).)))....(((((.((....))))))).)))))))))...)).)))))))..... ( -49.40) >DroAna_CAF1 33124 120 + 1 AAAAAGCCUCGCAGAUGCAGGCUCUGGUGGUGGGAUUGCAGCUGCCAUGGCCGGAGCAAUUGUUCUGGCAGACCGUUGUGCGAAUGUCCACGAAGAGGGCACCCAAGAUGGAGGCAUCCU .....(((((((....))..(((((..(.(((((.(((((.(.((....((((((((....)))))))).....)).))))))...))))).)..)))))..........)))))..... ( -46.90) >consensus AGAAGGCCUCGCAGAUGCAGGCUCUGGUCGUGGGAUUGCAUCUGCCAUGACCGGAGCAAUUAUUCUGGCAGACUGUGGUGCGAAUGUCCACAUAGAGUGCACCCAAUAUGGAGGCAUCCU .....(((((((....))..((.((.......(((((((((......((.((((((......)))))))).......)))))...))))......)).))..........)))))..... (-19.40 = -20.41 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:59 2006