Locus 2834

Sequence ID 3L_DroMel_CAF1
Location 8,058,173 – 8,058,287
Length 114
Max. P 0.829368
window4431

overview

Window 1

Location 8,058,173 – 8,058,287
Length 114
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 84.65
Mean single sequence MFE -31.01
Consensus MFE -21.26
Energy contribution -22.90
Covariance contribution 1.64
Combinations/Pair 1.04
Mean z-score -2.18
Structure conservation index 0.69
SVM decision value 0.71
SVM RNA-class probability 0.829368
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8058173 114 + 23771897
CGG-GGCAUAGAGCUCGAGAAGUGGGCAACUAAAAGCCGAGUCGGAGACGAAAGUGCUAAAAUUGAAUCAUUGAAAGUUGGCUUGAAUAAGUGCACUUGAAGGUGCCAGUUGCCA
..(-(((.....))))........(((((((....(((...(((....)))((((((.....(..(..((........))..)..)......))))))...)))...))))))). ( -34.90)
>DroSec_CAF1 4672 115 + 1
CGGGGGCAGAGAGCUCGAGAAGUGGGCAACUAAAAGCCGAGUCGGAGACGAAAGUGCUAAAAUUGAAUCAUUGAAAGUUGGCUUAAAUAAGUGCACUUGAAGGUGCCAGUUGCCA
...((((.....))))........(((((((....(((...(((....)))((((((.....((((..((........))..))))......))))))...)))...))))))). ( -35.20)
>DroSim_CAF1 4731 115 + 1
CGGGGGCAGAGAGCUCGAGAAGUGGGCAACUAAAAGCCGAGUCGGAGACGAAAGUGCUAAAAUUGAAUCAUUGAAAGUUGGCUUAAAUAAGUGCACUUGAAGGUGCCAGUUGCCA
...((((.....))))........(((((((....(((...(((....)))((((((.....((((..((........))..))))......))))))...)))...))))))). ( -35.20)
>DroEre_CAF1 5052 106 + 1
-GGGAGCAGAGAGCU--------CGAGAACUAAAAGCCGAGUUCGAGGCGAAAGUGCUAAAAUUGAAUCAUUGAAAGUUGGCUAAAAUAAGUGCACUUAAAGUUGCCAGUCGCCA
-((..((...(((((--------((............)))))))..(((((((((((........(..((........))..).........))))))....))))).))..)). ( -25.93)
>DroYak_CAF1 4942 97 + 1
-G---------AAGU--------GGGAAACUAAAAGCCGAGUCGUUGGCGAAAGUGCUAAAAUGGAAUCAUUGAAUGUUGGCUAAAAUAAGUGCACUUGAAGGUGCCAGUCGCCA
-.---------....--------.((..(((...((((((.((.((((((....))))))((((....))))))...)))))).......(.(((((....)))))))))..)). ( -23.80)
>consensus
CGGGGGCAGAGAGCUCGAGAAGUGGGCAACUAAAAGCCGAGUCGGAGACGAAAGUGCUAAAAUUGAAUCAUUGAAAGUUGGCUUAAAUAAGUGCACUUGAAGGUGCCAGUUGCCA
........................(((((((..(((((((.(((....))).((((............)))).....)))))))......(.(((((....))))))))))))). (-21.26 = -22.90 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:57 2006