Locus 2833

Sequence ID 3L_DroMel_CAF1
Location 8,050,938 – 8,051,051
Length 113
Max. P 0.998333
window4430

overview

Window 0

Location 8,050,938 – 8,051,051
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 92.83
Mean single sequence MFE -25.12
Consensus MFE -22.22
Energy contribution -22.66
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -2.23
Structure conservation index 0.88
SVM decision value 3.07
SVM RNA-class probability 0.998333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8050938 113 - 23771897
AUCUAUUUAUUUGUACGUCGAUUUUGUUUUAUUUACUCGAUAUCUGAGCAAACAGAAAUCAUCUCAAAUUGAUUCGAAAUCGACACGUGCGUUUAAAUGGGAAAAAUCUUUUA
.((((((((..(((((((((((((((..(((.......(((.((((......)))).))).........)))..))))))))))..)))))..))))))))............ ( -30.49)
>DroSec_CAF1 21990 113 - 1
AGCUAUUUAUUUGUGCGUUGAUUUUGUUUUAUUUACUCGAUAUCUGAGCAAACAGAAAUCAUCUCAAAUCGAUUCAAAAUCGACACGUGCGUUUAAAUGGGAAAAAUCUUUUA
..(((((((..((..(((((((((((..((((((....(((.((((......)))).))).....)))).))..))))))))..)))..))..)))))))............. ( -26.90)
>DroSim_CAF1 22162 113 - 1
AGCUAUUUAUUUGUGCGUUGAUUUUGUUUUAUUUACUCGAUAUCUGAGCAAACAGAAAUCAUCUCAAAUCGAUUCGAAAUCGACACGUGCGUUUAAAUGGGAAAAAUCUUUUA
..(((((((..((..(((((((((((..((((((....(((.((((......)))).))).....)))).))..))))))))..)))..))..)))))))............. ( -26.60)
>DroEre_CAF1 21910 113 - 1
AUUUAUUUAUUUGUACGUCUACUUUGUUUUAUUUACUCGAUAUCUGAGCAAGCAGAAAUCAUCUCAAAUUGAUUCGAAAUCGACACGUGCGUUUAAAUGGGAAAAAUCUAUUA
.((((((((..(((((((....................(((.((((......)))).))).............(((....))).)))))))..))))))))............ ( -21.00)
>DroYak_CAF1 22933 109 - 1
AUGUAUUUAUUUGUACGUCUAUUUUGCUUUAUUUACUUGAUAUCUGAGCAAACAGAAAUCAUCUCAAA----UUCGAAUUCGACACGUGCGUUUAAAUGGGAAAAAUCUAUUA
.(.((((((..(((((((...................((((.((((......)))).)))).......----.(((....))).)))))))..)))))).)............ ( -20.60)
>consensus
AUCUAUUUAUUUGUACGUCGAUUUUGUUUUAUUUACUCGAUAUCUGAGCAAACAGAAAUCAUCUCAAAUCGAUUCGAAAUCGACACGUGCGUUUAAAUGGGAAAAAUCUUUUA
..(((((((..(((((((((((((((....((((....(((.((((......)))).))).....)))).....))))))))))..)))))..)))))))............. (-22.22 = -22.66 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:56 2006