Locus 2832

Sequence ID 3L_DroMel_CAF1
Location 8,050,775 – 8,050,895
Length 120
Max. P 0.753014
window4429

overview

Window 9

Location 8,050,775 – 8,050,895
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.50
Mean single sequence MFE -28.12
Consensus MFE -22.60
Energy contribution -23.20
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.80
SVM decision value 0.48
SVM RNA-class probability 0.753014
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8050775 120 - 23771897
CAAUCUAAUUGAUUUGCGUAUUUGUUUAUCAGAUGGUUUUUCGUACGCUUUCGCAUUUGCAGGAAAUGCCAAAGUGGAGCGAAAAUAAGCAAAAAUCUUCAGUAAGUUUUGGUAUAAAUA
(((.((.((((((((((.((((((.....))))))..(((((((.((((((.((((((.....)))))).))))))..)))))))...))))).....))))).))..)))......... ( -30.00)
>DroSec_CAF1 21824 120 - 1
CAAUCUAAUUGAUUUGCGUAUUUGUUUAUCAGAUGGUUUUUGGUACGCUUUCGCAUUUGCAGGAAAUGCCAAAGUGGAGCGAAAAUAAGCAAAAAUCUUCAGUACAUUUUGGUAUGAAUA
............(((((.((((((.....))))))(((((((.(.((((((.((((((.....)))))).)))))).).)))))))..)))))....((((.(((......))))))).. ( -27.60)
>DroSim_CAF1 21995 120 - 1
CAAUCUAAUUGAUUUGCGUAUUUGUUUAUCAGAUGGUUUUUGGUACGCUUUCGCAUUUGCAGGAAAUGCCAAAGUGGAGCGAAAAUAAGCAAAAAUCUUCAGUACAUUUUGCUAUACAUA
........(((((..(((....)))..)))))((((((((((.(.((((((.((((((.....)))))).)))))).).))))))).(((((((............)))))))...))). ( -28.00)
>DroEre_CAF1 21756 111 - 1
CAAUCUAAUUGAUUUGCGUAUUUGUUUAUCAGAUGGUCUUUGGUACGCUUUCGCAUUUGCAGGAAAUGCCAAAGUGGAGCGAAAAUAAGCAAAAGAC---------UUUUGGUAUAAAUA
.((((.....))))....(((((((..((((((.(((((((....((((((.((((((.....)))))).))))))..((........)).))))))---------)))))))))))))) ( -27.30)
>DroYak_CAF1 22775 120 - 1
CAAUCUAAUUGAUUUGCGUAUUUGUUUAUCAGAUGGUUUUUCGUACGCUUUCGCAUUUGCAGGAAAUGCCAAAGUGGAGCGAAAAUAAGCAAAAGUCUUCAGGAAAUUUUGGUAUAAAUA
...(((....(((((((.((((((.....))))))..(((((((.((((((.((((((.....)))))).))))))..)))))))...))))..)))....)))................ ( -27.70)
>consensus
CAAUCUAAUUGAUUUGCGUAUUUGUUUAUCAGAUGGUUUUUGGUACGCUUUCGCAUUUGCAGGAAAUGCCAAAGUGGAGCGAAAAUAAGCAAAAAUCUUCAGUAAAUUUUGGUAUAAAUA
............(((((.((((((.....))))))(((((((.(.((((((.((((((.....)))))).)))))).).)))))))..)))))........................... (-22.60 = -23.20 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:55 2006