Locus 2831

Sequence ID 3L_DroMel_CAF1
Location 8,049,956 – 8,050,076
Length 120
Max. P 0.663810
window4428

overview

Window 8

Location 8,049,956 – 8,050,076
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.58
Mean single sequence MFE -27.94
Consensus MFE -27.30
Energy contribution -27.34
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.08
Structure conservation index 0.98
SVM decision value 0.27
SVM RNA-class probability 0.663810
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8049956 120 + 23771897
CUAAAAAACUUCUUCAUCGCAACUCGAUCGGCACAAGUUGCUAUUGGAGACUCAAUCACGGCUUUCGGAUGACUCAGAGAUGUUUUAGGCGAAAGCCAAUUCAUUCAUACGUAGAUACAC
(((.......((((((..((((((.(.......).))))))...)))))).........((((((((..(((..((....))..)))..))))))))..............)))...... ( -28.50)
>DroSec_CAF1 20992 120 + 1
CUAAAAAACUUCUUCAUCGCAACUCGAUCGGCACAAGUUGCUAUUGGAGACUCAAUCACGGCUUUCGGAUGACUCAGAGAUGUUUUAGGCGAAAGCCAAUUCAUACAUACGUAGAUACAC
..........((((((..((((((.(.......).))))))...))))))....(((..((((((((..(((..((....))..)))..))))))))......(((....)))))).... ( -29.40)
>DroSim_CAF1 21146 120 + 1
CUAAAAAACUUCUUCAUCGCAACUCGAUCGGCACAAGUUGCUAUUGGAGACUCAAUCACGGCUUUCGGAUGACUCAGAGAUGUUUUAGGCGAAAGCCAAUUCAUUCAUACGUAGAUACAC
(((.......((((((..((((((.(.......).))))))...)))))).........((((((((..(((..((....))..)))..))))))))..............)))...... ( -28.50)
>DroEre_CAF1 20906 119 + 1
CUAAA-AACUUCUUCAUUGCAACUCGAUCGGCACAAGUUGCUAUUGGAGAUCCAAGCACGGCUUUUGGAUGACUCAGAGAUGUUUUAGGCGAAAGCCAAUUCAUUCAUACGUAGAUACAC
(((((-(((.((((((..((((((.(.......).))))))...))(((((((((((...)))..)))))..))).)))).))))).(((....)))..............)))...... ( -28.50)
>DroYak_CAF1 21585 119 + 1
CUAAA-AACUUCUUCAUUGCAACUCGAUCGACGCAAGUUGCUAUUGGAUACCCAACCACGGCUUUCGGAUGACUCAGAGAUGUUUUAGGCGAAAGCCCAUUCAUUCAUACGUAGAUACAC
.....-....(((.(...((((((((.....))..))))))..((((....))))....((((((((..(((..((....))..)))..)))))))).............).)))..... ( -24.80)
>consensus
CUAAAAAACUUCUUCAUCGCAACUCGAUCGGCACAAGUUGCUAUUGGAGACUCAAUCACGGCUUUCGGAUGACUCAGAGAUGUUUUAGGCGAAAGCCAAUUCAUUCAUACGUAGAUACAC
(((.......((((((..((((((.(.......).))))))...)))))).........((((((((..(((..((....))..)))..))))))))..............)))...... (-27.30 = -27.34 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:54 2006