Locus 2829

Sequence ID 3L_DroMel_CAF1
Location 8,048,682 – 8,048,784
Length 102
Max. P 0.919414
window4424

overview

Window 4

Location 8,048,682 – 8,048,784
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.01
Mean single sequence MFE -27.42
Consensus MFE -22.64
Energy contribution -23.28
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.84
Structure conservation index 0.83
SVM decision value 1.13
SVM RNA-class probability 0.919414
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8048682 102 + 23771897
ACCGUUGAACAAACCUUUCGUGAGCUAACCAAGCGAGCUGAUCUCGAUUCCAGCAUGAAAGUUAAUGCACAACUAAUGCCCACUGUCAAGGUUAGUUU-----------------C-ACU
...................(((((((((((......((((..........)))).(((.(((....(((.......)))..))).))).)))))).))-----------------)-)). ( -22.80)
>DroSec_CAF1 19768 105 + 1
ACCGUAGAGCAAACCUUUCGGGAGCUAACCAAGCGAGCUGAUCUCGAUUCCAGCAUGAAAGUUAAUGCACAACUAAUGCCCACUGUCAAGGUUAGUUCG--------------CAU-ACU
.(((.((((.....)))))))...........((((((((((((.(((....((((...((((.......)))).)))).....))).)))))))))))--------------)..-... ( -30.80)
>DroSim_CAF1 19851 105 + 1
ACCGUAGAGCAAACCUUUCGGGAGCUAACCAAGCGAGCUGAUCUCGAUUCCAGCAUGAAAGUUAAUGCACAACUAAUGCCCACUGUCAAGGUUAGUUCG--------------CAU-ACU
.(((.((((.....)))))))...........((((((((((((.(((....((((...((((.......)))).)))).....))).)))))))))))--------------)..-... ( -30.80)
>DroEre_CAF1 19642 120 + 1
ACCGUAGAGCAAACCUUUCGGGAGCUAACCAAGCGAUCUGAUCUCGAUUCCAGCAUGAAAGUUAAUGCACCACUAAUGCCCACUGUCAAGGUUAGUUCCACUCAACUACCUCAAAUACCU
......(((...........((((((((((..((((((.......))))...)).(((.(((....(((.......)))..))).))).))))))))))..........)))........ ( -25.20)
>DroYak_CAF1 20295 111 + 1
ACCGUAGAGCAAACCUUUCGGGAGCUAACCAAGCGAGCUGAUCUCGAUUCCAGCAUGAAAGUUAAUGCACAACUAAUGCCCACUGUCAAGGUUAGUUCCACUC---------AAAUAACU
..((.((((.....))))))((((((((((......((((..........)))).(((.(((....(((.......)))..))).))).))))))))))....---------........ ( -27.50)
>consensus
ACCGUAGAGCAAACCUUUCGGGAGCUAACCAAGCGAGCUGAUCUCGAUUCCAGCAUGAAAGUUAAUGCACAACUAAUGCCCACUGUCAAGGUUAGUUCC______________AAU_ACU
.(((.((((.....)))))))(((((((((......((((..........)))).(((.(((....(((.......)))..))).))).)))))))))...................... (-22.64 = -23.28 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:50 2006