Locus 2828

Sequence ID 3L_DroMel_CAF1
Location 8,047,207 – 8,047,326
Length 119
Max. P 0.753816
window4423

overview

Window 3

Location 8,047,207 – 8,047,326
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.60
Mean single sequence MFE -33.14
Consensus MFE -23.68
Energy contribution -25.44
Covariance contribution 1.76
Combinations/Pair 1.11
Mean z-score -2.49
Structure conservation index 0.71
SVM decision value 0.48
SVM RNA-class probability 0.753816
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8047207 119 - 23771897
ACGCACGAGCCAUGCUAAAAAAUCAACGCCAAAUGCCGAUUAUUCAUACCCGGUAUAGCCAUCCAAUAUUGUGGUGGUUAUAG-CGCUAUAUACUAUAUGUAUAGUGGGCCUGUUUGCCA
..(((((.(((..((((................(((((............)))))((((((((((....)).)))))))))))-)((((((((.....)))))))).))).)))..)).. ( -31.50)
>DroSec_CAF1 18346 116 - 1
ACGCACGAGCCAUGCUAAA-AAUCAACGCCAAAUGCCGAUUAUUCAUACCCGGUAUAGCCAUCCAAUAUUGU---GGUUAUAGCCGCUAUAUACUAUAUGUAUAGUGGGCUCGUUUGCCA
..(((((((((..((((..-.............(((((............)))))(((((((........))---)))))))))(((((((((.....))))))))))))))))..)).. ( -36.30)
>DroSim_CAF1 18384 116 - 1
ACGCACGAGCCAUGCUAAA-AAUCAACGCCAAAUGCCGAUUAUUCAUACCCGGUAUAGCCAUCCAAUAUUGU---GGUUAUAGCCGCUAUAUACUAUGUGUAUAGUGGGCUCGUUUGCCA
..(((((((((..((((..-.............(((((............)))))(((((((........))---)))))))))((((((((((...)))))))))))))))))..)).. ( -38.30)
>DroEre_CAF1 18192 108 - 1
ACGCACGAGCCAUGCUAAA-AAUCAACGCCAAAUGCCGAUUAUUCAUACCCGGUAUAGCCAUCCAAUAUUGU---GGUUAUAG-CGCUAUAUACUG-------AGUGGGCUCGUUGGCCA
..(((((((((..((((..-.............(((((............)))))(((((((........))---))))))))-)(((........-------))).)))))))..)).. ( -29.10)
>DroYak_CAF1 18781 108 - 1
ACGCACGGGCCAUGCUAAA-AAUCAACGCCAAAUGCCGAUUAUUCAUACCCGGCAUAGCCAUCCAAUAUCGU---GGUUAUAG-CGCUAUAUACUG-------AGUGGGCUCGUUGGCCA
..(((((((((.((((...-......(((.....((((............))))((((((((........))---)))))).)-))..........-------)))))))))))..)).. ( -30.51)
>consensus
ACGCACGAGCCAUGCUAAA_AAUCAACGCCAAAUGCCGAUUAUUCAUACCCGGUAUAGCCAUCCAAUAUUGU___GGUUAUAG_CGCUAUAUACUAU_UGUAUAGUGGGCUCGUUUGCCA
..(((((((((.......................((((............))))((((((...............))))))...(((((((((.....))))))))))))))))..)).. (-23.68 = -25.44 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:49 2006