Locus 2824

Sequence ID 3L_DroMel_CAF1
Location 8,044,341 – 8,044,448
Length 107
Max. P 0.666987
window4414

overview

Window 4

Location 8,044,341 – 8,044,448
Length 107
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 89.82
Mean single sequence MFE -31.18
Consensus MFE -24.28
Energy contribution -24.40
Covariance contribution 0.12
Combinations/Pair 1.19
Mean z-score -1.60
Structure conservation index 0.78
SVM decision value 0.28
SVM RNA-class probability 0.666987
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8044341 107 - 23771897
AACGAUUGGCACGAAAUAAUAAAGAGUUUCGUUGGGUU-----UUCGGUCUCAGGGGUUGCCAACAAUUAGUGGAAUUUAAAAUCCAAAGUCAGAGUCGCAGAGCGAUUUGC
......(((((((((((........)))))))((((((-----((..((..((..(((((....)))))..))..))..))))))))..))))(((((((...))))))).. ( -30.00)
>DroSec_CAF1 15438 107 - 1
AACGACUAUCACGAAAUAAUACAGAGUUUCGUUGGGUU-----AUCGGUCCCAGGGGUUGCCAACAAUUAGUGGGAUUUAAAAUCCAAAGUCAGAGUCGCAGAGCGAUUUGC
...((((...(((((((........)))))))((((((-----.(..((((((..(((((....)))))..))))))..).)))))).)))).(((((((...))))))).. ( -35.10)
>DroSim_CAF1 15441 107 - 1
AACGAUUGGCACGAAAUAAUAUAGAGUUUCGUUGGGUU-----AUCGGUCCCAGGGGUUGCCAACAAUUAGUGGGAUUUAAAACCCAAAGUCAGAGUCGCAGAGCGAUUUGC
......(((((((((((........)))))))((((((-----.(..((((((..(((((....)))))..))))))..).))))))..))))(((((((...))))))).. ( -37.00)
>DroEre_CAF1 15277 107 - 1
AACGAUUGGCACGAAAUAGUAAAGAGUUUUGUUGGGUU-----UUCGGUCCCAGGGGUUGCCAGCAAUUAGUGGGGUUCCAAAUCCAACUUCAGAGUCGUAGAGCGAUUUGC
..(((.(.((((......))...((.(((.((((((((-----(..(..((((..(((((....)))))..))))..)..)))))))))...))).)).....)).).))). ( -29.40)
>DroYak_CAF1 15752 112 - 1
AACGAUUGGCACGAAGUAAUAAAGAGUUUCGUUGGGUUUCAGUUUCGGUCUCAGGGGUUGCCAACAAUUAGUGGCAUUUAAAAACCAAAUUCAGAGUCGCCGAGCGAUUUGC
..((.(((((((((((..........)))))).((.(((.(((((.(((.....((((.((((........))))))))....)))))))).))).))))))).))...... ( -24.40)
>consensus
AACGAUUGGCACGAAAUAAUAAAGAGUUUCGUUGGGUU_____UUCGGUCCCAGGGGUUGCCAACAAUUAGUGGGAUUUAAAAUCCAAAGUCAGAGUCGCAGAGCGAUUUGC
...((((...(((((((........)))))))((((((........(((((((..(((((....)))))..)))))))...)))))).)))).(((((((...))))))).. (-24.28 = -24.40 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:40 2006