Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,042,612 – 8,042,727 |
Length | 115 |
Max. P | 0.838636 |
Location | 8,042,612 – 8,042,727 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 90.09 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -19.22 |
Energy contribution | -21.58 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.06 |
Structure conservation index | 0.75 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8042612 115 + 23771897 UAUUUGCUGAAUAUUUCUUCUAUAUUUUCUGCGGAUAUGGAAUUGUUUAGAAUUUCAAAACAAAUAUUUUGAGCAUAGGGGUUAUGCAUAUUUGAAUAUCUCCAAUAUCCCGGAU ........((((((.......))))))((((.(((((((((..((((((((...((((((......))))))((((((...))))))...))))))))..))).)))))))))). ( -27.90) >DroSec_CAF1 13754 115 + 1 UAUUUGCCGAAUAUUUCUUCUAUAUUUUCUGCGGUAAUGGAAGUGUUUAAUAUUUCAAAAGAAGUAUUUUGAGCAUAGGGGUUAUCCAUAUUUGAAUAUCUCCAAUAUCCCGGAU ........((((((.......))))))((((.((((.((((..(((((((((((((((((......))))))).)))(((....)))....)))))))..)))).)))).)))). ( -24.50) >DroSim_CAF1 13764 115 + 1 UAUUUGUCGAAUAUUUCUUCUAUAUUUUCUGCGGUAAUGGAAGUGUUUAAUAUUUCAAAAGAAGUAUUUUGAGCAUAGGGGUUAUGCAUAUUUGAAUAUCUCCAAUAUCCCGGAU ........((((((.......))))))((((.((((.((((..(((((((....((((((......))))))((((((...))))))....)))))))..)))).)))).)))). ( -26.10) >DroEre_CAF1 13640 107 + 1 UACUUGUUGAAUAUUUCUUCUAUAUUUUCUGCGGAUAUGGAAGUGUUUAAUAUUUCAAAACAUGUAUUUUGAGCAUAGGGAUUAUGCAU--------AUCUCCAAUAUCCCGAAU ....(((((((((...(((((((((((.....)))))))))))))))))))).(((((((......)))))))....(((((..((...--------.....))..))))).... ( -22.80) >DroYak_CAF1 14124 115 + 1 UGUUUGUUGAAUAUUUCUUCUAUAUUUUCUGCGGAUAUUGAAGUGUUUAAUAUUUCAAAACAGGUAUUUUGAGCAUAGGGAUUAUGCAUAUUUAAAUAUCUCCAAUAUCCCGGAU ........((((((.......))))))((((.((((((((.(((((((((....((((((......))))))((((((...))))))....))))))).)).)))))))))))). ( -26.40) >consensus UAUUUGUUGAAUAUUUCUUCUAUAUUUUCUGCGGAUAUGGAAGUGUUUAAUAUUUCAAAACAAGUAUUUUGAGCAUAGGGGUUAUGCAUAUUUGAAUAUCUCCAAUAUCCCGGAU ........((((((.......))))))((((.(((((((((..(((((((....((((((......))))))((((((...))))))....)))))))..))).)))))))))). (-19.22 = -21.58 + 2.36)
Location | 8,042,612 – 8,042,727 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 90.09 |
Mean single sequence MFE | -19.52 |
Consensus MFE | -14.48 |
Energy contribution | -15.92 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.88 |
Structure conservation index | 0.74 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.710987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8042612 115 - 23771897 AUCCGGGAUAUUGGAGAUAUUCAAAUAUGCAUAACCCCUAUGCUCAAAAUAUUUGUUUUGAAAUUCUAAACAAUUCCAUAUCCGCAGAAAAUAUAGAAGAAAUAUUCAGCAAAUA .((.(((((((.((((............(((((.....)))))(((((((....)))))))............)))))))))).).)).......(((......)))........ ( -20.70) >DroSec_CAF1 13754 115 - 1 AUCCGGGAUAUUGGAGAUAUUCAAAUAUGGAUAACCCCUAUGCUCAAAAUACUUCUUUUGAAAUAUUAAACACUUCCAUUACCGCAGAAAAUAUAGAAGAAAUAUUCGGCAAAUA ..((.((.((.(((((.((((((....)))))).....(((..((((((......)))))).)))........))))).))))............(((......)))))...... ( -15.00) >DroSim_CAF1 13764 115 - 1 AUCCGGGAUAUUGGAGAUAUUCAAAUAUGCAUAACCCCUAUGCUCAAAAUACUUCUUUUGAAAUAUUAAACACUUCCAUUACCGCAGAAAAUAUAGAAGAAAUAUUCGACAAAUA ...(((.....(((((............(((((.....)))))((((((......))))))............)))))...)))...........(((......)))........ ( -15.80) >DroEre_CAF1 13640 107 - 1 AUUCGGGAUAUUGGAGAU--------AUGCAUAAUCCCUAUGCUCAAAAUACAUGUUUUGAAAUAUUAAACACUUCCAUAUCCGCAGAAAAUAUAGAAGAAAUAUUCAACAAGUA .(((.((((((.((((..--------..(((((.....)))))(((((((....)))))))...........)))).))))))...)))......(((......)))........ ( -21.10) >DroYak_CAF1 14124 115 - 1 AUCCGGGAUAUUGGAGAUAUUUAAAUAUGCAUAAUCCCUAUGCUCAAAAUACCUGUUUUGAAAUAUUAAACACUUCAAUAUCCGCAGAAAAUAUAGAAGAAAUAUUCAACAAACA .((.((((((((((((...(((((....(((((.....)))))(((((((....)))))))....)))))..))))))))))).).)).......(((......)))........ ( -25.00) >consensus AUCCGGGAUAUUGGAGAUAUUCAAAUAUGCAUAACCCCUAUGCUCAAAAUACUUGUUUUGAAAUAUUAAACACUUCCAUAUCCGCAGAAAAUAUAGAAGAAAUAUUCAACAAAUA .((.(((((((.((((............(((((.....)))))(((((((....)))))))...........)))).)))))).).)).......(((......)))........ (-14.48 = -15.92 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:35 2006