Locus 282

Sequence ID 3L_DroMel_CAF1
Location 800,975 – 801,126
Length 151
Max. P 0.513924
window422 window423

overview

Window 2

Location 800,975 – 801,088
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.83
Mean single sequence MFE -28.96
Consensus MFE -21.98
Energy contribution -22.22
Covariance contribution 0.24
Combinations/Pair 1.16
Mean z-score -1.50
Structure conservation index 0.76
SVM decision value -0.04
SVM RNA-class probability 0.513924
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 800975 113 - 23771897
ACAGGCACUUGAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGAAGCAACAGACUGGGCGGAUUUCAAAAUGGGACCGUCAAAUUGCUAGCUUUCAAAUCAGCAAUAUUAUUG-------
....((........((((((((....))))))))...((((((((((..(((....(((((.(..(.....)..))))))...)))...)).)))))))).))..........------- ( -27.30)
>DroSec_CAF1 164527 120 - 1
ACAGGCAGUUGAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGAAGCAACAGACUGGGUGGAUUCCGAAAUGGGACCGUCAAAUUGCUGGCUUUCAAAUCAGCAAUGUAUUUAAAUGUGU
....(((.(((((.((((((((....))))))))...((((((((((..(((....(..((.((((.....))))))..)......))))).)))))))).........))))).))).. ( -28.40)
>DroSim_CAF1 159181 120 - 1
ACAGGCAGUUGAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGAAGCAACAGACUGGGCGGAUUCCAUAAUGGGACCGUCAAAUUGCUGGCUUUCAAAUCAGCAAUGUAUUUAAAUGUAU
....(((.(((((.((((((((....))))))))...((((((((((..(((....(((((.((((.....)))))))))......))))).)))))))).........))))).))).. ( -33.10)
>DroEre_CAF1 164124 120 - 1
ACAAGCAGUUUAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUAAGACAAGGGAUUGGGCGGAUUUCAAAGUGGGAACGUCAAAUUGCCAGCUUUAAAAUCAGAAAUGUAUUUAAAUGUGU
....(((((((...((((((((....))))))))..((((((........))))))((((..(..(.....)..).)))))))))))..((((((((..((....))..)))))).)).. ( -22.50)
>DroYak_CAF1 164055 119 - 1
ACAGGCAGUUUAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGUAGCAAGGGAUUGGGCGGGU-CCAAAAUGGGACCGUCAAAUUGCCAGUUUUAAAAUCAGCAAUGUAUUUAAAUAUGU
...((((((((....(((((.(((.((........)).))).))))).........(((((..-((.....))..)))))))))))))...((((((..((....))..))))))..... ( -33.50)
>consensus
ACAGGCAGUUGAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGAAGCAACAGACUGGGCGGAUUCCAAAAUGGGACCGUCAAAUUGCUAGCUUUCAAAUCAGCAAUGUAUUUAAAUGUGU
....((........((((((((....))))))))...((((((((((...((....(((((.((((.....)))))))))......)).)).)))))))).))................. (-21.98 = -22.22 +   0.24)

alignment

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secondary structure

Postscript

dotplot

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Window 3

Location 801,008 – 801,126
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 93.05
Mean single sequence MFE -33.06
Consensus MFE -27.92
Energy contribution -28.00
Covariance contribution 0.08
Combinations/Pair 1.11
Mean z-score -1.23
Structure conservation index 0.84
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 801008 118 - 23771897
GAUUUGCAUCGGAUGCAGAUCGUGAAAUCCCAAGGGUCACAGGCACUUGAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGAAGCAACAGACUGGGCGGAUUUCAAAAUGGGACCGUC
(((((((((...)))))))))((.(((((.((((.((.....)).))))...((((((((....))))))))...)))))...)).........(((((.(..(.....)..)))))) ( -30.00)
>DroSec_CAF1 164567 118 - 1
GAUUUGCAUCGGAUGCAGAUCGUGAAAUCCCAAGGGUCACAGGCAGUUGAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGAAGCAACAGACUGGGUGGAUUCCGAAAUGGGACCGUC
(((((((((...)))))))))......(((((.(((((.((..(((((.....(((...(((.((........)).)))...)))....)))))..)))).)))....)))))..... ( -31.50)
>DroSim_CAF1 159221 118 - 1
GAUUUGCAUCGGAUGCAGAUCGUGAAAUCCCAAGGGUCACAGGCAGUUGAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGAAGCAACAGACUGGGCGGAUUCCAUAAUGGGACCGUC
(((((((((...)))))))))((((...((....))))))...(((((.....(((...(((.((........)).)))...)))....)))))(((((.((((.....))))))))) ( -35.20)
>DroEre_CAF1 164164 118 - 1
GAUUUGCAUCGGAUGCAGAUCGUGAAAUCCCAAGGGUCACAAGCAGUUUAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUAAGACAAGGGAUUGGGCGGAUUUCAAAGUGGGAACGUC
(((((((((...)))))))))....((((((....(((..(((..(((....((((((((....)))))))))))..)))..)))..)))))).((((..(..(.....)..).)))) ( -29.40)
>DroYak_CAF1 164095 117 - 1
GAUUUGCAUCGGAUGCAGAUCGUGAAAUCCCAAGGGUCACAGGCAGUUUAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGUAGCAAGGGAUUGGGCGGGU-CCAAAAUGGGACCGUC
(((((((((...)))))))))((..((((((....(..(((((..(((....((((((((....)))))))))))..)))))..)..))))))..)).(((-((......)))))... ( -39.20)
>consensus
GAUUUGCAUCGGAUGCAGAUCGUGAAAUCCCAAGGGUCACAGGCAGUUGAAAAGCUAUUAGUGGUAAUGGUUAACGAUUUGAAGCAACAGACUGGGCGGAUUCCAAAAUGGGACCGUC
(((((((((...)))))))))((((...((....))))))...(((((.....(((...(((.((........)).)))...)))....)))))(((((.((((.....))))))))) (-27.92 = -28.00 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:15 2006