Locus 2819

Sequence ID 3L_DroMel_CAF1
Location 8,041,260 – 8,041,364
Length 104
Max. P 0.547380
window4402

overview

Window 2

Location 8,041,260 – 8,041,364
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 99.23
Mean single sequence MFE -23.10
Consensus MFE -22.34
Energy contribution -22.34
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.97
SVM decision value 0.03
SVM RNA-class probability 0.547380
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8041260 104 + 23771897
CCAAGGCAAGUCUCGCUUGAUAAGUUAUACUCAUUUAUAAUCAUCGAAAUGGGUCAGCAGCACUGCUCAAGUCGAGCAAACAAUUGCGCACGCAAUUUUUAUUA
.........(.(((((((((........((((((((..........))))))))..(((....)))))))).)))))....((((((....))))))....... ( -23.00)
>DroSec_CAF1 12394 103 + 1
CCAAGGCAAGUCUGGCUUGAUAAGUUAUACUCAUUUAUAAUCAUCGAAAUGGGUCAGCAGCACUGCUCAAGUCGAGCA-ACAAUUGCGCACGCAAUUUUUAUUA
.........(..((((((((........((((((((..........))))))))..(((....)))))))))))..).-..((((((....))))))....... ( -23.50)
>DroSim_CAF1 12407 103 + 1
CCAAGGCAAGUCUCGCUUGAUAAGUUAUACUCAUUUAUAAUCAUCGAAAUGGGUCAGCAGCACUGCUCAAGUCGAGCA-ACAAUUGCGCACGCAAUUUUUAUUA
.........(.(((((((((........((((((((..........))))))))..(((....)))))))).))))).-..((((((....))))))....... ( -23.00)
>DroEre_CAF1 12225 103 + 1
CCAAGGCAAGUCUCGCUUGAUAAGUUAUACUCAUUUAUAAUCAUCGAAAUGGGUCAGCAGCACUGCUCAAGUCGAGCA-ACAAUUGCGCACGCAAUUUUUAUUA
.........(.(((((((((........((((((((..........))))))))..(((....)))))))).))))).-..((((((....))))))....... ( -23.00)
>DroYak_CAF1 12715 103 + 1
CCAAGGCAAGUCUCGCUUGAUAAGUUAUACUCAUUUAUAAUCAUCGAAAUGGGUCAGCAGCACUGCUCAAGUCGAGCA-ACAAUUGCGCACGCAAUUUUUAUUA
.........(.(((((((((........((((((((..........))))))))..(((....)))))))).))))).-..((((((....))))))....... ( -23.00)
>consensus
CCAAGGCAAGUCUCGCUUGAUAAGUUAUACUCAUUUAUAAUCAUCGAAAUGGGUCAGCAGCACUGCUCAAGUCGAGCA_ACAAUUGCGCACGCAAUUUUUAUUA
..............(((((((.......((((((((..........)))))))).((((....))))...)))))))....((((((....))))))....... (-22.34 = -22.34 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:29 2006