Locus 2818

Sequence ID 3L_DroMel_CAF1
Location 8,040,294 – 8,040,391
Length 97
Max. P 0.801225
window4401

overview

Window 1

Location 8,040,294 – 8,040,391
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 97.94
Mean single sequence MFE -23.56
Consensus MFE -20.22
Energy contribution -20.22
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.86
SVM decision value 0.62
SVM RNA-class probability 0.801225
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8040294 97 - 23771897
AACAGUUGUCGGCAUUUGUACAAAGUGCAACCGCAAAGCAGCUGAUCGAAUCGAUUUAAUUCGCAAUUACUCCGUCACAAAAUUGCACAGUUCUUGU
..(((((((..((..((((((...))))))..))...)))))))...((((.((......))((((((............))))))...)))).... ( -21.70)
>DroSec_CAF1 11446 97 - 1
AACAGUUGUCGGCGUUUGUACAAAGUGCAACCGCAAAGCAGCUGAUCGAAUCGAUUUAAUUCGCAAUUACUCCGUCACAAAAUUGCACAGUUCUUGU
..(((((((..(((.((((((...)))))).)))...)))))))...((((.((......))((((((............))))))...)))).... ( -25.10)
>DroSim_CAF1 11449 97 - 1
AACAGUUGUCGGCGUUUGUACAAAGUGCAACCGCAAAGCAGCUGAUCGAAUCGAUUUAAUUCGCAAUUACUCCGUCAUAAAAUUGCACAGUUCUUGU
..(((((((..(((.((((((...)))))).)))...)))))))...((((.((......))((((((............))))))...)))).... ( -25.10)
>DroEre_CAF1 11276 97 - 1
AACAGUUGUCGGCAUUUGUACAAAGUGCAACCGCAAAGCAGCUGAUCGAAUCGAUUUAAUGUGCAAUUACUCCGUCACAAAAUUGCACAGUUCUUGU
..(((((((..((..((((((...))))))..))...)))))))((((...))))....(((((((((............)))))))))........ ( -25.30)
>DroYak_CAF1 11742 97 - 1
AACAGUUGUCGGCAUUUGUACAAAGUGCAACCGCAAAGCAGCUGAUCGAAUCGAUUUAAUUUGCAAUUACUCCGUCACAAAAUUGCACAGUUCUUGU
..(((((((..((..((((((...))))))..))...)))))))((((...))))......(((((((............))))))).......... ( -20.60)
>consensus
AACAGUUGUCGGCAUUUGUACAAAGUGCAACCGCAAAGCAGCUGAUCGAAUCGAUUUAAUUCGCAAUUACUCCGUCACAAAAUUGCACAGUUCUUGU
..(((((((..((..((((((...))))))..))...)))))))((((...)))).......((((((............))))))........... (-20.22 = -20.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:28 2006