Locus 2815

Sequence ID 3L_DroMel_CAF1
Location 8,039,315 – 8,039,434
Length 119
Max. P 0.822085
window4395

overview

Window 5

Location 8,039,315 – 8,039,434
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.50
Mean single sequence MFE -19.86
Consensus MFE -17.44
Energy contribution -17.84
Covariance contribution 0.40
Combinations/Pair 1.09
Mean z-score -1.48
Structure conservation index 0.88
SVM decision value 0.68
SVM RNA-class probability 0.822085
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8039315 119 - 23771897
CGUAAACAAAAACAUGUGCAA-AGGCCAAAACUUCAAUCAAGUGAAAUGGAAAUUGAAAAUGUAUAACGCAAAACCAUGUGGGAAUACGCAAAUCUAUUUGUUUGGCCAAGAGAGAAAGA
.....................-.(((((((((((.....)))).(((((((..(((....(((((..((((......))))...)))))))).))))))).)))))))............ ( -20.90)
>DroSec_CAF1 10528 120 - 1
CGUAAACAAAAACAUGUGCAAAAGGCCAAAACUUCAAUCAAGUGAAAUGGAAAUUGAAAAUGUAUAACGGAAAAACAUGUGGGAAUACGCAAAUCAAUUUGUUUGGCCAAGAGAGAAAGA
.......................(((((((..((((......))))....(((((((...........(......).((((......))))..))))))).)))))))............ ( -19.90)
>DroSim_CAF1 10510 120 - 1
CGUAAACAAAAACAUGUGCAAAAGGCCAAAACUUCAAUCAAGUGAAAUGGAAAUUGAAAAUGUAUAACGGAAAAACAUGUGGGAAUACGCAAAUCAAUUUGUUUGGCCAAGAGAGAAAGA
.......................(((((((..((((......))))....(((((((...........(......).((((......))))..))))))).)))))))............ ( -19.90)
>DroEre_CAF1 10341 120 - 1
CGUAAACAAAAACAUGUGCAAAAGGCCAAAACUUCAAUCAAGUGAAAUGGAAAUUGAAAAUGUAUAACGGAAAACCGUACGGGAAUACGCAAAUCAGAUUGUUUGGCCAAGAGAGAAAGA
.......................(((((((....(((((...........................((((....)))).((......)).......))))))))))))............ ( -19.70)
>DroYak_CAF1 10778 120 - 1
CGUAAACAAAAACAUGUGCAAAAGGCCAAAACUUCAAUCAAGUGAAAUGGAAAUUGAAAAUGUAUAACGGAAAAACAUGCGGGAAUACGCAAAUCAAAUUGUUUGGCCAAGAGAGAAAGA
.......................(((((((..((((......)))).......((((...........(......).((((......))))..))))....)))))))............ ( -18.90)
>consensus
CGUAAACAAAAACAUGUGCAAAAGGCCAAAACUUCAAUCAAGUGAAAUGGAAAUUGAAAAUGUAUAACGGAAAAACAUGUGGGAAUACGCAAAUCAAUUUGUUUGGCCAAGAGAGAAAGA
.......................(((((((..((((......))))....(((((((...........(......).((((......))))..))))))).)))))))............ (-17.44 = -17.84 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:22 2006