Locus 2814

Sequence ID 3L_DroMel_CAF1
Location 8,036,105 – 8,036,212
Length 107
Max. P 0.922664
window4394

overview

Window 4

Location 8,036,105 – 8,036,212
Length 107
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 94.51
Mean single sequence MFE -28.58
Consensus MFE -24.70
Energy contribution -25.90
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.86
SVM decision value 1.15
SVM RNA-class probability 0.922664
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8036105 107 - 23771897
AAAUCAAAGCGGCCAUAAACGCGUGUCGUUUGGCUGUCCACUGUAGUGGAAUAGCCAUUUGUCACUUGGUAUCACCGUGAAUUAAACACUUUUCCCAGCCCCCAA-AC
..(((((.(((........)))(((.((..(((((((((((....)))).)))))))..)).))))))))......(((.......)))................-.. ( -30.60)
>DroSec_CAF1 7491 107 - 1
AAAUCAAAGCGGCCAUAAACGCGUGUCGUUUGGCUGUCCAGUGUUGUGGAAUAGCCAUUUGUCACUUGGUAUCAGCGUGAAUUAAACACUUUUCCCCGCCCACAG-AC
..(((((.(((........)))(((.((..((((((((((......))).)))))))..)).))))))))....(((.(((..........)))..)))......-.. ( -28.60)
>DroSim_CAF1 7442 107 - 1
AAAUCAAAGCGGCCAUAAACGCGUGUCGUUUGGCUGUCCAGUGUUGUGGAAUAGCCAUUUGUCACUUGGUAUCAGCGUGAAUUAAACACUUUUCCCCGCCCACAG-AU
..(((((.(((........)))(((.((..((((((((((......))).)))))))..)).))))))))....(((.(((..........)))..)))......-.. ( -28.60)
>DroEre_CAF1 7253 107 - 1
AAAUCAACGCAGCCAUAAACGCGUGUCGUUUGGCUGUCCACUGUUGUGGAAUAGCCAUUUGUCACUUGGUAUCACCGUGAAUUAAACACUUUUCCCCGCCCACAA-AC
........((.((((.......(((.((..(((((((((((....)))).)))))))..)).))).))))......(((.......)))........))......-.. ( -27.70)
>DroYak_CAF1 7652 108 - 1
AAAUCAAGGCAGCCAUAAACGCGUGUCGUUUGGCUGUCCACUGUUGUGGAAUUGCCAUUUAUCACUUGGUAUCACCGUGAAUUAAACACUUUUCCCCGCCCACAAAAC
.......((((((((..((((.....)))))))))))).....((((((...(((((.........))))).....(((.......)))..........))))))... ( -27.40)
>consensus
AAAUCAAAGCGGCCAUAAACGCGUGUCGUUUGGCUGUCCACUGUUGUGGAAUAGCCAUUUGUCACUUGGUAUCACCGUGAAUUAAACACUUUUCCCCGCCCACAA_AC
..(((((.(((........)))(((.((..(((((((((((....)))).)))))))..)).))))))))......(((.......)))................... (-24.70 = -25.90 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:21 2006