| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,035,250 – 8,035,345 |
| Length | 95 |
| Max. P | 0.937546 |
| Location | 8,035,250 – 8,035,345 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 86.42 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -20.52 |
| Energy contribution | -20.78 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8035250 95 - 23771897 UGGAGCGGCUGUGCUGCGGCUACAACUAAUUGAAAUGCAUUGAAAGUGCGUGCGACCAGUAAAUGCUGCAUAUAUAAAAAAUAUACAAACAAAUA-- ....(((((..(((((..((..(((....)))..((((((.....))))))))...)))))...)))))..........................-- ( -20.70) >DroSec_CAF1 6657 78 - 1 UGGAGCGGCUGUGCUGCGGCUCCAACUAAUUGAAAUGCAUUGAAAGUGCGUGCGACCAGUAAAUGC-----------------AACAAACAAAUA-- ((((((.((......)).))))))(((..(((..((((((.....)))))).)))..)))......-----------------............-- ( -22.20) >DroSim_CAF1 6592 94 - 1 UGGAGCGGCUGUGCUGCGGCUCCAACUAAUUGAAAUGCAUUGAAAGUGCGUGCGACCAGUAAAUGCUGCAUAUA-AAAAAAUAAACAAACAAAUA-- ((((((.((......)).)))))).....(((..((((((.....)))))).....((((....))))......-..........))).......-- ( -23.10) >DroEre_CAF1 6386 90 - 1 UGGAGCGGCUGCGUUGCGGCUCCAACUAAUUGAAAUGCAUUGAAAGUGCGUGCGACCAGUAAAUGCUGCAUAAA-AA------AACAAACAAAUACG ((((((.((......)).)))))).....(((..((((((.....)))))).....((((....))))......-..------..)))......... ( -23.10) >consensus UGGAGCGGCUGUGCUGCGGCUCCAACUAAUUGAAAUGCAUUGAAAGUGCGUGCGACCAGUAAAUGCUGCAUAUA_AA______AACAAACAAAUA__ ((((((.((......)).))))))(((..(((..((((((.....)))))).)))..)))..................................... (-20.52 = -20.78 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:20 2006