Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 8,034,151 – 8,034,259 |
Length | 108 |
Max. P | 0.717131 |
Location | 8,034,151 – 8,034,259 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.32 |
Mean single sequence MFE | -34.08 |
Consensus MFE | -26.75 |
Energy contribution | -28.92 |
Covariance contribution | 2.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.22 |
Structure conservation index | 0.78 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8034151 108 - 23771897 CUUACGGCUCUUGAGAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU-CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAAGAUUUUU--------- (((((((((((((.....)))))..)))((((((.((..(((.(((....))))))..)).)))))-).))))).(((((.......))))).(((.....))).....--------- ( -37.10) >DroVir_CAF1 5747 83 - 1 -------------------------GCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU-CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAGAAUGUUU--------- -------------------------(((((((((.((..(((.(((....))))))..)).)))))-)....)))(((((.......)))))((((....)))).....--------- ( -28.40) >DroPse_CAF1 4738 117 - 1 CUCGUUG-UUCCAACAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAGAAUCUUUUUGUGAUUU ...((((-...)))).(((((((.((((....))))....((((((((.......))))))((((....))))))(((((.......))))))))))))..(((((.......))))) ( -37.40) >DroSec_CAF1 5549 108 - 1 CUUGAAAUUCUUAAAAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU-CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAAGAUUUUU--------- ...((((.((((....(((((((..(((((((((.((..(((.(((....))))))..)).)))))-)....)))(((((.......)))))))))))).)))).))))--------- ( -37.20) >DroEre_CAF1 5524 86 - 1 ----------------------AUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU-CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAAUACUUUU--------- ----------------------...(((((((((.((..(((.(((....))))))..)).)))))-)....)))(((((.......))))).................--------- ( -27.00) >DroPer_CAF1 4770 117 - 1 CUCGUUG-UUCCAACAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAGAAUCUUUUUGUGAUUU ...((((-...)))).(((((((.((((....))))....((((((((.......))))))((((....))))))(((((.......))))))))))))..(((((.......))))) ( -37.40) >consensus CU_G__G_U___AA_AGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU_CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAAAAUUUUU_________ ................(((((((.......(((..((((.((...)).)).))..))).((((((....))))))(((((.......))))))))))))................... (-26.75 = -28.92 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:19 2006