Locus 281

Sequence ID 3L_DroMel_CAF1
Location 797,828 – 797,937
Length 109
Max. P 0.987094
window421

overview

Window 1

Location 797,828 – 797,937
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 89.41
Mean single sequence MFE -30.08
Consensus MFE -27.52
Energy contribution -28.22
Covariance contribution 0.70
Combinations/Pair 1.11
Mean z-score -2.14
Structure conservation index 0.91
SVM decision value 2.07
SVM RNA-class probability 0.987094
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 797828 109 - 23771897
UCAUCCUCAACAUCUCGCAUCCUGCAAUCUCGGUCCUAAACAUUUGCAGCGCAUUAAGCUGAUUAAUUGAAGUCAUCAUGGACUGUGGCAGGCUGUGAGCAAGAAAUUG
.............((((((.(((((.....((((((..........((((.......))))......(((.....))).))))))..))))).))))))(((....))) ( -32.30)
>DroSec_CAF1 161383 105 - 1
U----CUCAACAUCUCGCAUCCUGCAAUCUCGGUCCUAAACAUUUGCAGCGCAUUAAGCUGAUUAAUUGAAGUCAUCAUGGACUGUGGCAGACUGUGAGCAAGAAAUUG
.----........((((((..((((.....((((((..........((((.......))))......(((.....))).))))))..))))..))))))(((....))) ( -28.60)
>DroSim_CAF1 156031 109 - 1
UCAUCCUCAACAUCUCGCAUCCUGCAAUCUCGGUCCUAAACAUUUGCAGCGCAUUAAGCUGAUUAAUUGAAGUCAUCAUGGACUGUGGCAGGCUGUGAGCAAGAAAUUG
.............((((((.(((((.....((((((..........((((.......))))......(((.....))).))))))..))))).))))))(((....))) ( -32.30)
>DroEre_CAF1 160816 93 - 1
UC----------------AUCCUGCAAUCUCAGUCCUAAACAUUUGCAGCGCAUUAAGCUGAUUAAUUGAAGUCAUCAUGGACUGUGGCAGGCUGUGAGCAAGAAAUUG
((----------------(((((((.....((((((..........((((.......))))......(((.....))).))))))..)))))..)))).(((....))) ( -26.00)
>DroYak_CAF1 160517 103 - 1
GCAUCC------UCUCGCAUCCUGCAAUCUCAGUUCUAAACAUUUGCAGCGCAUUAAGCUGAUUAAUUGAAGUCAUCAUGGACUGUGGCAGGCUGUGAGCAAGAAAUUG
......------.((((((.(((((.....((((((..........((((.......))))......(((.....))).))))))..))))).))))))(((....))) ( -30.10)
>DroAna_CAF1 176588 101 - 1
--------GACAGCUUGCAUCCUGCAAUCUCGGUCCUAAACAUUUGCAGCGCAUUAAGCUGAUUAAUUGAAGUCAUCAUGGACUGUGGCAGGCAGUGAGCAAAAAAUUG
--------....(((..(..(((((.....((((((..........((((.......))))......(((.....))).))))))..)))))..)..)))......... ( -31.20)
>consensus
UC___C__AACAUCUCGCAUCCUGCAAUCUCGGUCCUAAACAUUUGCAGCGCAUUAAGCUGAUUAAUUGAAGUCAUCAUGGACUGUGGCAGGCUGUGAGCAAGAAAUUG
.............((((((.(((((.....((((((..........((((.......))))......(((.....))).))))))..))))).))))))(((....))) (-27.52 = -28.22 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:13 2006