| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,016,282 – 8,016,387 |
| Length | 105 |
| Max. P | 0.667341 |
| Location | 8,016,282 – 8,016,387 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 83.02 |
| Mean single sequence MFE | -14.73 |
| Consensus MFE | -9.24 |
| Energy contribution | -10.80 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.667341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8016282 105 - 23771897 GUAAUAUUUUACAUUGUGUUACAAUAUUUUAGGCUUAAAUUACCAAUCAAUGUCUUCAUUUAAAU-ACGUCUACAAUUGUAGCACCUUCCACCAAAUCAUUCAAUC ((((....))))...((((((((((....(((((((((((.................))))))..-..)))))..))))))))))..................... ( -14.43) >DroSec_CAF1 2792 105 - 1 GUAAUGCUUUACAUUGUGUUACAAUAUUCUCGAUUUAAAUUCCCAAUCAAUUUUUUCAUUUAAAUUGUGCGUACAAUUGUAUCACCACCUUACAAAUCAUUCAAU- (((((((........)))))))..(((.(.((((((((((.................)))))))))).).)))...(((((.........)))))..........- ( -12.93) >DroSim_CAF1 10665 103 - 1 GUAAUGCUUUACAUUGUGUUACAAUAUUCUCGAUUUAAAUUCCCAAUCAAUUUUUCCAUUUAAAUUGUGCGUACAAUUGUAGC---ACCUUCCCAAUCAUUCAAGC ((((....))))...((((((((((((.(.((((((((((.................)))))))))).).)))...)))))))---)).................. ( -16.83) >consensus GUAAUGCUUUACAUUGUGUUACAAUAUUCUCGAUUUAAAUUCCCAAUCAAUUUUUUCAUUUAAAUUGUGCGUACAAUUGUAGCACCACCUUCCAAAUCAUUCAAUC ((((....))))...((((((((((...(.((((((((((.................)))))))))).)......))))))))))..................... ( -9.24 = -10.80 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:14 2006