Locus 2808

Sequence ID 3L_DroMel_CAF1
Location 8,012,403 – 8,012,519
Length 116
Max. P 0.985663
window4386

overview

Window 6

Location 8,012,403 – 8,012,519
Length 116
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 97.13
Mean single sequence MFE -27.03
Consensus MFE -26.27
Energy contribution -26.78
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -3.19
Structure conservation index 0.97
SVM decision value 2.01
SVM RNA-class probability 0.985663
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8012403 116 + 23771897
UUUCUCAUUAUCAUUAACACUUCUGACAUUGUGCCUAGACGAUUUUAUUCGUUUUCGCAACUCAGACAUGCAAAUCGCUUUUCUGCCCGCAAGAAAAGCGCCCUAAUGUAUGCUAC
.....................(((((..(((((...((((((......)))))).))))).)))))((((((...(((((((((.......)))))))))......)))))).... ( -30.00)
>DroSim_CAF1 6744 116 + 1
UUUCUCAUUAUCAUUAACACUUCUGACAUUGUGCCUAGACGAUUUUAUUCGUUUUCGCAACUCAUUCAUGCAAAUCGCUUUUCUGCCUGCAAGAAAAGCGCCCUAAUGUAUGCUAC
.......................(((..(((((...((((((......)))))).))))).)))..((((((...(((((((((.......)))))))))......)))))).... ( -25.10)
>DroEre_CAF1 3383 116 + 1
UUUCUCAUUAUCAUUAACACUGCUGACAUUGUGCCUAGACGAUUUUAUUCGUUUUCGCAACUCAGACAUGCAAAUCGCUUUUCUGCCUCCAAGCAAAGCGCCCUAAUGUAUGCUAC
......................((((..(((((...((((((......)))))).))))).)))).((((((...((((((.((.......)).))))))......)))))).... ( -24.30)
>DroYak_CAF1 34918 116 + 1
UUUCUCAUUAUCAUUAACACUGCUGACAUUGUGCCUAGACGAUUUUAUUCGUUUUCGCAACUCAGACAUGCAAAUCGCUUUUCUGCCUCCAAGAAAAGCGCCCUAAUGUAUGCUAC
......................((((..(((((...((((((......)))))).))))).)))).((((((...(((((((((.......)))))))))......)))))).... ( -28.70)
>consensus
UUUCUCAUUAUCAUUAACACUGCUGACAUUGUGCCUAGACGAUUUUAUUCGUUUUCGCAACUCAGACAUGCAAAUCGCUUUUCUGCCUCCAAGAAAAGCGCCCUAAUGUAUGCUAC
......................((((..(((((...((((((......)))))).))))).)))).((((((...(((((((((.......)))))))))......)))))).... (-26.27 = -26.78 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:13 2006