Locus 2806

Sequence ID 3L_DroMel_CAF1
Location 8,010,728 – 8,010,831
Length 103
Max. P 0.588568
window4384

overview

Window 4

Location 8,010,728 – 8,010,831
Length 103
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 84.85
Mean single sequence MFE -24.48
Consensus MFE -15.98
Energy contribution -16.05
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.588568
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8010728 103 + 23771897
GGGCGACGGCUGCUGAUGCUGCUGGCUGGCUGGCCUCUCAAACGAA-AAAAAAAAGAGGAAGGGUCCAAAACAUCAUUUUGUGUAAUACAAAAAGUAUGUAUGG
((((..((((.((....)).)))).....((..(((((........-.......)))))..))))))...(((((.(((((((...))))))).).)))).... ( -26.46)
>DroSim_CAF1 5079 96 + 1
GGGCGACGGCUGCUGAUGCUGCU--------GGCCUCUCAAACGAACAAAAAAAAAAGGAAGGGUCCAAAACAUCAUUUUGUGUAAUACAAAAAGUAUGUAUGG
((((..((((.((....)).)))--------).(((..(..................)..)))))))...(((((.(((((((...))))))).).)))).... ( -21.77)
>DroEre_CAF1 1719 91 + 1
GGGCGACGGCUGCUGAUGCUG-----------GCCUCUCAAA--AUCCGAAAAAAAAGGAAGGGUCCAAAACAUCGUUUUGUGUAAUACAAAAAGUAUGUAUAG
((((((.((((((....)).)-----------))))).....--.(((.........)))...))))...(((((.(((((((...))))))).).)))).... ( -21.80)
>DroYak_CAF1 33214 90 + 1
GGGCGAAGGCUGCUGAUGCUC-----------CUCUCUCAAA--AA-AGAAAGAGGAGGAAGGGUCCAUAACAUCGUUUUGUGUAAUACAAAAAGUAUGUAUGG
.(((....)))(((..(.(((-----------((((.((...--..-.)).))))))).)..)))(((((.((((.(((((((...))))))).).)))))))) ( -27.90)
>consensus
GGGCGACGGCUGCUGAUGCUG___________GCCUCUCAAA__AA_AAAAAAAAAAGGAAGGGUCCAAAACAUCAUUUUGUGUAAUACAAAAAGUAUGUAUGG
((((..((((.......))))............(((..(..................)..)))))))...(((((.(((((((...))))))).).)))).... (-15.98 = -16.05 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:11 2006