Locus 2805

Sequence ID 3L_DroMel_CAF1
Location 8,009,417 – 8,009,525
Length 108
Max. P 0.500000
window4383

overview

Window 3

Location 8,009,417 – 8,009,525
Length 108
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 81.23
Mean single sequence MFE -24.76
Consensus MFE -14.12
Energy contribution -14.52
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.57
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8009417 108 + 23771897
-CUGGGGGGAAUAAACCCCAAAGUUAUUAGUCAAUUAACAAAAGCGAAUAUGUUGCAAUUAAUGUUGCGUAGUCGCAGUGAAACUAAGCGGGAAAGAGAUAGCCAG----AAG
-((((((((......))))..........(((...........((((.(((((.(((.....))).))))).)))).((........))........)))..))))----... ( -26.60)
>DroPse_CAF1 408 96 + 1
CUCUGGGAGAAUAUGCCCCAAAGUUAUUAGUCAAUUAACAGCAGCGAAAAUGUUGCAAUUAAUGUUGCGUAUUCUCUAC-AAAC------------AACAAGCCAC----AUG
.....(((((((((((..((..((((.........)))).(((((......)))))......))..)))))))))))..-....------------..........----... ( -22.70)
>DroSim_CAF1 3749 109 + 1
CCAGGGGGGCAUAAACCCCAAAGUUAUUAGUCAAUUAACAAAAGCGAAUAUGUUGCAAUUUAUGUUGCGUAGUCACAGAGAAACUAAGCGGAAAAGAGACAGCUAG----AGG
((.((((........))))..........(((...........((((.....))))........((((.((((.........)))).))))......)))......----.)) ( -19.80)
>DroEre_CAF1 374 112 + 1
-CUGGGGUGAAUAAACCCCAAAGUUAUUAGUCAAUUAACAAAAGCGAAUAUGUUGCAAUUAAUGUUGCGUAGUCACAGAGAAACUGCGCGAAAAAGAGACAGCUAGAUAGAUG
-.((((((......)))))).........(((...........((((.....))))........(((((((((.........)))))))))......)))............. ( -27.70)
>DroYak_CAF1 31888 108 + 1
-CUGGGGUGAAUAAACCCCAAAGUUAUUAGUCAAUUAACAAAAGCGAAUAUGUUGCAAUUAAUGUUGCGUAGUCACAGAAUAACUGCGCGCGAAAGAGACAGCCAG----AUG
-.((((((......)))))).........(((...........((((.....))))......(((((((((((.........))))))).(....).))))....)----)). ( -27.00)
>consensus
_CUGGGGGGAAUAAACCCCAAAGUUAUUAGUCAAUUAACAAAAGCGAAUAUGUUGCAAUUAAUGUUGCGUAGUCACAGAGAAACUAAGCGGAAAAGAGACAGCCAG____AUG
...((((........))))...((((.........))))....(.((.(((((.(((.....))).))))).)).)..................................... (-14.12 = -14.52 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:10 2006