Locus 2803

Sequence ID 3L_DroMel_CAF1
Location 8,006,130 – 8,006,228
Length 98
Max. P 0.917836
window4380

overview

Window 0

Location 8,006,130 – 8,006,228
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 94.56
Mean single sequence MFE -32.97
Consensus MFE -32.83
Energy contribution -32.07
Covariance contribution -0.77
Combinations/Pair 1.17
Mean z-score -1.90
Structure conservation index 1.00
SVM decision value 1.12
SVM RNA-class probability 0.917836
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8006130 98 - 23771897
GGGUGGGUGAGCCCUGCCGCGGGUGACAUAAAAAUAUUAUAAAUGUAAAUGGCGAACGUCGUCGUCUCCGUUGUCGGGCACAUUUCUCAUGUGAGCGA
(((.(((((.((((.((.(((((.(((.........((((....))))..((((.....)))))))))))).)).)))).)))))))).......... ( -31.10)
>DroSim_CAF1 208 98 - 1
GGGGGGGUGAGCCCUGCCGCGGGUGACAUAAAAAUAUUAUAAAUGUAAAUGGCGAACGUCGUCGUCUCCGUUGUCGGGCACAUUUCUCAUGUGAGCGA
.(((..(((.((((.((.(((((.(((.........((((....))))..((((.....)))))))))))).)).)))).)))..))).......... ( -35.90)
>DroYak_CAF1 28343 98 - 1
UGGGAAAUGAGCCUUGCCGUGGGUGACAUAAAAAUAUUAUAAAUGUAAAUGGCGAACGUCGUCGUCUCCGUUGUCGGGCACAUUUCUCAUGUGAGCUA
(((((((((.((((.((..((((.(((.........((((....))))..((((.....)))))))))))..)).)))).)))))))))......... ( -31.90)
>consensus
GGGGGGGUGAGCCCUGCCGCGGGUGACAUAAAAAUAUUAUAAAUGUAAAUGGCGAACGUCGUCGUCUCCGUUGUCGGGCACAUUUCUCAUGUGAGCGA
.((((((((.((((.((..((((.(((.........((((....))))..((((.....)))))))))))..)).)))).)))))))).......... (-32.83 = -32.07 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:07 2006