Locus 280

Sequence ID 3L_DroMel_CAF1
Location 796,409 – 796,499
Length 90
Max. P 0.681372
window420

overview

Window 0

Location 796,409 – 796,499
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.88
Mean single sequence MFE -26.14
Consensus MFE -16.12
Energy contribution -17.15
Covariance contribution 1.03
Combinations/Pair 1.18
Mean z-score -1.60
Structure conservation index 0.62
SVM decision value 0.31
SVM RNA-class probability 0.681372
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 796409 90 + 23771897
GCGGCUCUA------------UAUGUAUGUAGCCAAAUCCAAUGCAAAUACAGCAACGCAGGGAGCCAGGUCCAAGUUGUCUGCGGGCAAAACGCCUCUGCA
(..(((.((------------(.(((((.............))))).))).)))..)((((((.((...((((.((....))..)))).....)))))))). ( -26.02)
>DroSec_CAF1 160035 90 + 1
GCGGCUGUA------------UAUGCAUGUAGCCAAAUCCAAUGCAAAAACAGCAACGCAGGGAGCCAAGUCCAAGUUGUCUGCGAGCAAAACGCCUCUGCA
((((((((.------------(.(((((.............))))).).)))))..((((((.(((.........))).)))))).......)))....... ( -26.42)
>DroSim_CAF1 154696 90 + 1
GCGGCUGUA------------UAUGCAUGUAGCCAAAUCCAAUGCAAAAACAGCAACGCAGGGAGCCAAGUCCAAGUUGUCUGCGGGCAAAACGCCUCUGCA
(..(((((.------------(.(((((.............))))).).)))))..)((((((.((...((((.((....))..)))).....)))))))). ( -28.82)
>DroEre_CAF1 159353 85 + 1
AUGGCUGCA-----------------AUGUAGCCAAAUCGAAUGGAAAAACAGCAACGCAGGGAGCCAGGUCCAAGUUGUCUGCAGGCAAAACGCCUCUGCA
.(((((((.-----------------..))))))).................(((..(((((.(((.........))).)))))((((.....)))).))). ( -26.30)
>DroYak_CAF1 159037 102 + 1
AUGGCUGUACGGCUGUACGGCUGAAUAUGUAGCCAAAUCGAAUGGAAAAACAGCAACGCAGGGAGCCAGGUCCAAGUUGUCUGCAGGCAAAACGCCUCUGCA
.(((((((((((((....)))))....)))))))).................(((..(((((.(((.........))).)))))((((.....)))).))). ( -29.70)
>DroAna_CAF1 175131 75 + 1
-------------------------CAUGCAACAGCAGGCAAU--AGCAACGGCAAUGCAGGGAGUCAAGUCCAAGUUGUCUGCAAGUAAAACGCCUCUGCA
-------------------------.......(((.((((...--.(((..((((((....(((......)))..)))))))))..(.....)))))))).. ( -19.60)
>consensus
GCGGCUGUA____________UAUGCAUGUAGCCAAAUCCAAUGCAAAAACAGCAACGCAGGGAGCCAAGUCCAAGUUGUCUGCAGGCAAAACGCCUCUGCA
..(((((((..................)))))))..................(((..(((((.(((.........))).)))))((((.....)))).))). (-16.12 = -17.15 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:12 2006