Locus 2798

Sequence ID 3L_DroMel_CAF1
Location 7,961,816 – 7,961,932
Length 116
Max. P 0.959680
window4368

overview

Window 8

Location 7,961,816 – 7,961,932
Length 116
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 92.01
Mean single sequence MFE -28.46
Consensus MFE -25.62
Energy contribution -24.74
Covariance contribution -0.88
Combinations/Pair 1.25
Mean z-score -1.59
Structure conservation index 0.90
SVM decision value 1.50
SVM RNA-class probability 0.959680
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7961816 116 + 23771897
-AGCUAUGGCAGGAGCAUAUUGAUUUUGUUUUCAGGGUUUAGCGAACUAGUUUUAGCUGAUUAAAUUUGUGAAGGGUUGGUCCAAUUAUAAUUUAUUCUUCAAUUUGCUAUGGCUCU
-(((((((((((((((...((((........))))(((((...))))).......)))((.((((((.((((..((.....))..)))))))))).)).....)))))))))))).. ( -27.10)
>DroSec_CAF1 4953 116 + 1
-AGCUAUGGCAGGAGCAUAUUGAUUUUGCUUUCAGAGUUUAGCGAACUAGUUUUAGCUGAUUAAAUUUGUAAAGGGUUGGCCCAAUUAUAAUUUAUUCUUCAAUUUGCCAUGGCUCU
-(((((((((((((((..((((..((((((..........)))))).))))....)))((.((((((.((((.(((....)))..)))))))))).)).....)))))))))))).. ( -31.40)
>DroSim_CAF1 4986 116 + 1
-AGCUAUGGCAGGAGCAUAUUGAUUUUGUUUUCAGGGUUUAGCGAACUAGUUUUAGCUGAUUAAAUUUGUAAAGGGUUGGCCCAAUUAUAAUUUAUUCUUCAAUUUGCCAUGGCUCU
-(((((((((((((((...((((........))))(((((...))))).......)))((.((((((.((((.(((....)))..)))))))))).)).....)))))))))))).. ( -31.10)
>DroEre_CAF1 5154 116 + 1
-GGCCAUGGCAGCAGCAUAUUGAUUUCGUUUUCAGGGUUUAGCGAACUAGUUUUAGCUGAUUAAAUUUGUAAAGGGUUAGUCCAAUUAUAAUGUAUUCUUCAAUUUGCCAUGGCUCC
-(((((((((((((((..((((..((((((..........)))))).))))....)))).......((((((..((.....))..)))))).............))))))))))).. ( -31.00)
>DroYak_CAF1 5469 117 + 1
UAGCUGUGGUAGGAGCAUAUUGAUUUUGUUUUCCGCGCUUAGCGAACUAGUUUCAGCUGAUUAAAUUUGUAAAGGGUUGGUCCAAUUAUAAUUUAUUCUUCACUUCGCCAUGAUUCU
.(((.((((...(((((.........))))).)))))))..(((((..(((....)))((.((((((.((((..((.....))..)))))))))).)).....)))))......... ( -21.70)
>consensus
_AGCUAUGGCAGGAGCAUAUUGAUUUUGUUUUCAGGGUUUAGCGAACUAGUUUUAGCUGAUUAAAUUUGUAAAGGGUUGGUCCAAUUAUAAUUUAUUCUUCAAUUUGCCAUGGCUCU
.(((((((((((((((..((((..((((((..........)))))).))))....)))((.((((((.((((.(((....)))..)))))))))).)).....)))))))))))).. (-25.62 = -24.74 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:56 2006