Locus 2796

Sequence ID 3L_DroMel_CAF1
Location 7,959,111 – 7,959,202
Length 91
Max. P 0.840564
window4366

overview

Window 6

Location 7,959,111 – 7,959,202
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 97.58
Mean single sequence MFE -14.79
Consensus MFE -13.08
Energy contribution -12.92
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.55
Structure conservation index 0.88
SVM decision value 0.75
SVM RNA-class probability 0.840564
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7959111 91 + 23771897
CCACUCUCGUUUCGAUUCGCUUCCCUGCGAGUGCAACAUCCCGAAUAGCACCGAAUUUCAACCAUCAUCACGAUGAACCACCAUCCCUGCA
........(((.(.((((((......))))))).)))..........(((..((........((((.....))))........))..))). ( -14.79)
>DroSec_CAF1 4541 91 + 1
CCACUCUCGUUUCGAUUCGCUUCCCUGCGAGUGCAACAUCCCGAAUAGCACCGAAUUUCAACCAUCAUCACGAUGAACCACCAUCCCUGCA
........(((.(.((((((......))))))).)))..........(((..((........((((.....))))........))..))). ( -14.79)
>DroSim_CAF1 4574 91 + 1
CCACUCUCGUUUCGAUUCGCUUCCCUGCGAGUGCAACAUCCCGAAUAGCACCGAAUUUCAACCAUCAUCACGAUGAACCACCAUCCCUGCA
........(((.(.((((((......))))))).)))..........(((..((........((((.....))))........))..))). ( -14.79)
>DroEre_CAF1 4745 91 + 1
CCACUCUCGUUUCGAUUCGCUUCCCUGCGAGUGCAACAUCCCGAAUAGAACCGAGUUUCAACCAUCAUCACGAUGAACCACCAUCCCUGCA
.....((((.(((.(((((......(((....)))......))))).))).)))).......((((.....))))................ ( -16.00)
>DroYak_CAF1 5025 91 + 1
CCACACUCGUUUCGAUUCGCUUCCCUGCGAAUGCAACAUCCCGAAUAGAACCGAAUUUCAACCAUCAUCACGAUGAACCACCAUCCCUGCC
......(((.(((.(((((......(((....)))......))))).))).)))........((((.....))))................ ( -13.60)
>consensus
CCACUCUCGUUUCGAUUCGCUUCCCUGCGAGUGCAACAUCCCGAAUAGCACCGAAUUUCAACCAUCAUCACGAUGAACCACCAUCCCUGCA
..............((((((......))))))(((.......(((...........)))...((((.....))))............))). (-13.08 = -12.92 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:53 2006