| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,953,200 – 7,953,301 |
| Length | 101 |
| Max. P | 0.977135 |
| Location | 7,953,200 – 7,953,301 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 93.11 |
| Mean single sequence MFE | -25.14 |
| Consensus MFE | -22.02 |
| Energy contribution | -21.98 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.977135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7953200 101 + 23771897 AAUGCAAUAAAGGGCAACCGUAGAAAAAAAGCUGUGAGAGAGCCAAGAAACGUGACCCAGGCAA---AAUUUUGUUUGUUUGUCUGGCUCUGCAUAUACAUGUA .((((......((....))...................(((((((........(((.(((((((---....)))))))...))))))))))))))......... ( -24.80) >DroSec_CAF1 3461 100 + 1 AAUGCAAUAAAGGGCAACCGUUGGAA-AAAUCUGUGAGAGAGCCAAGAAACGUGACCCAGGCAA---AAUUUUGUUUGUUUGUCUGGCUCUGCAUAUACAUAUA .((((......((....)).......-...........(((((((........(((.(((((((---....)))))))...))))))))))))))......... ( -24.80) >DroSim_CAF1 3452 100 + 1 AAUGCAAUAAAGGGCAACCGUUGGAA-AAAUCUGUGAGAGAGCCAAGAAACGUGACCCAGGCAA---AAUUUUGUUUGUUUGUCUGGCUCUGCAUAUACAUAUA .((((......((....)).......-...........(((((((........(((.(((((((---....)))))))...))))))))))))))......... ( -24.80) >DroEre_CAF1 3522 103 + 1 AAUGCAAUAAAGGGCAAGCAUAAGAA-AAAGCUGCGAGAGAGCCAAGAAACGUGACCCAGGCAAAAAAAUUUUGUUUGUUUGUCUGGCUCUGCAUAUACAUGUA .((((........(((.((.......-...)))))...(((((((........(((.((((((((.....))))))))...))))))))))))))......... ( -25.10) >DroYak_CAF1 3521 100 + 1 AAUGCAAUAAAGCGCAGGCAUAAGAA-AAAGCUGCGAGAGAGCCAAGAAACGUGACCCAGGCAA---AAUUUUGUUUGUUUGUCUGGCUCUGCAUAUACAUGUA .((((.......(((((.........-....)))))..(((((((........(((.(((((((---....)))))))...))))))))))))))......... ( -26.22) >consensus AAUGCAAUAAAGGGCAACCGUAGGAA_AAAGCUGUGAGAGAGCCAAGAAACGUGACCCAGGCAA___AAUUUUGUUUGUUUGUCUGGCUCUGCAUAUACAUGUA .((((......((....))...................(((((((........(((.(((((((.......)))))))...))))))))))))))......... (-22.02 = -21.98 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:47 2006