Locus 2792

Sequence ID 3L_DroMel_CAF1
Location 7,950,669 – 7,950,771
Length 102
Max. P 0.810029
window4358

overview

Window 8

Location 7,950,669 – 7,950,771
Length 102
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 78.97
Mean single sequence MFE -42.38
Consensus MFE -20.72
Energy contribution -22.83
Covariance contribution 2.11
Combinations/Pair 1.07
Mean z-score -2.37
Structure conservation index 0.49
SVM decision value 0.64
SVM RNA-class probability 0.810029
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7950669 102 + 23771897
CUGCUGGCCCACGUGGAUGAUCCAAUACCAUCCCGUCAAGGUGCCGGCGAAUCCCCUGGUUCCACAGC------UCAACCAGCUGCGGCUGUGGAUUCCUCGGCCGCA
.((((((((((((.(((((.........))))))))...)).)))))))......((((((.......------..))))))..(((((((.((...)).))))))). ( -43.20)
>DroSec_CAF1 945 102 + 1
CUGCUGGCCCACGUGGAUGAUCCAAUACCAUCCCGUCAAGGUGCCGGCGAAUCCCCUGGUUCCGCAGC------UCAACCAGCUGCUGCUGUGGAUUCCUCGGGCGCA
..(((((((((((.(((((.........))))))))...)).))))))(...(((..((.((((((((------.((......))..))))))))..))..)))..). ( -43.50)
>DroSim_CAF1 945 102 + 1
CUGCUGGCCCACGUGGAUGAUCCAAUACCAUCCCGUCAAGGCGCCGGCGAAUCCCCUGGUUCCGCAGC------UCAACCAGCUGCUGCUGUGGAUUCCUCGGCCGCA
..((..(((.(((.(((((.........))))))))...)))(((((.((((((.(.(((...(((((------(.....)))))).)))).)))))).))))).)). ( -42.40)
>DroEre_CAF1 951 102 + 1
CUACUGGCCCACGUGGAUGAUCCCAUACCAUCCCGUCCAAGUGCCGGGGAAUCCCCUGGUCCUGGAGC------CCAGCCAGCUGCGGCUGUGGAUUCCUCGGCCGGA
...((((((.(((.(((((.........))))))))...((..((((((....))))))..))(((((------((((((......))))).)).))))..)))))). ( -49.00)
>DroYak_CAF1 935 102 + 1
CUACUGGCCCACGUGGAUGAUCCAAUACCAUCCCGACAAGGAGCCGGGGAAUCCCCUAGUCCUGGAGC------UCAACCAGCUGCAGCUGUGGAUUCCUCAGCCGGA
...(((((...((.(((((.........)))))))..........(((((((((..(((..(((.(((------(.....)))).)))))).))))))))).))))). ( -39.30)
>DroAna_CAF1 915 102 + 1
CUGCUGGCCCACGGUGACGAGGAGAUACCGGCAAAUUGGAAUUCCGGGGAAUCCCCAGCCUCCACAGAGAAUCGUCAGACAUCCGG---GGAGGAU---GCGGCUGCA
..((.((((.....((((((((.....))(((.....((....))((((...)))).)))...........))))))(.(((((..---...))))---)))))))). ( -36.90)
>consensus
CUGCUGGCCCACGUGGAUGAUCCAAUACCAUCCCGUCAAGGUGCCGGCGAAUCCCCUGGUUCCGCAGC______UCAACCAGCUGCGGCUGUGGAUUCCUCGGCCGCA
...((((((((((.(((((.........))))))))...)).))))).((((((.(((......)))............((((....)))).)))))).......... (-20.72 = -22.83 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:46 2006