Locus 2790

Sequence ID 3L_DroMel_CAF1
Location 7,915,404 – 7,915,497
Length 93
Max. P 0.999893
window4355

overview

Window 5

Location 7,915,404 – 7,915,497
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -31.23
Consensus MFE -29.91
Energy contribution -29.93
Covariance contribution 0.03
Combinations/Pair 1.03
Mean z-score -2.53
Structure conservation index 0.96
SVM decision value 4.41
SVM RNA-class probability 0.999893
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7915404 93 + 23771897
----CUCUUUAACCGCAUCUGUGUUUACCCAUUAGCGUUUUUCGGGCUGGCAGCUUAAAAUGUUUACUCGGCUCGCCGACGAAGACGCUGAUGGUUU
----.....(((.(((....))).))).((((((((((((((((((((((.(((.......)))...)))))))).....))))))))))))))... ( -30.30)
>DroSec_CAF1 14601 93 + 1
----CUCUUUAACCGCAUCUGUGUUUACCCAUUAGCGUUUUUCGGGCUGGCAGCUUAAAAUGUUUACUCGGCUCGCCGACGAAGACGCUGAUGGUUU
----.....(((.(((....))).))).((((((((((((((((((((((.(((.......)))...)))))))).....))))))))))))))... ( -30.30)
>DroSim_CAF1 14971 93 + 1
----CUCUUUAACCGCAUCUGUGUUUACCCAUUAGCGUUUUUCGGGCUGGCAGCUUAAAAUGUUUACUCGGCUCGCCGACGAAGACGCUGAUGGUUU
----.....(((.(((....))).))).((((((((((((((((((((((.(((.......)))...)))))))).....))))))))))))))... ( -30.30)
>DroEre_CAF1 14779 93 + 1
----CUCUUUAACCGCAUCUGUGUUUACCCAUUAGCGUUUUUCGGGCUGGCAGCUUAAAAUGUUUACUCGGCUCGCCGCCGAAGACGCUGAUGGUGU
----.........(((....)))...((((((((((((((((..(((.(((((((..............)))).)))))))))))))))))))).)) ( -33.24)
>DroYak_CAF1 14695 93 + 1
----CGCUUUAACCGCAUCUGUGUUUACCCAUUAGCGUUUUUCGGGCUGGCAGCUUAAAAUGUUUACUCGGCUCGCCGCCGAAGACGCUGAUGGUGU
----.........(((....)))...((((((((((((((((..(((.(((((((..............)))).)))))))))))))))))))).)) ( -33.24)
>DroAna_CAF1 13471 97 + 1
GAAUCACUUUAACCGCAUCUGUGUUUACCCAUUAGCGUUUUUCGGGCUGGCAGCUUAAAAUGUUUACCCGGCUCGCCGACGAAGACGCUGAUGAUUU
.........(((.(((....))).)))..(((((((((((((((((((((.(((.......)))...)))))))).....))))))))))))).... ( -30.00)
>consensus
____CUCUUUAACCGCAUCUGUGUUUACCCAUUAGCGUUUUUCGGGCUGGCAGCUUAAAAUGUUUACUCGGCUCGCCGACGAAGACGCUGAUGGUUU
.........(((.(((....))).))).((((((((((((((((((((((.(((.......)))...)))))))).....))))))))))))))... (-29.91 = -29.93 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:43 2006