Locus 279

Sequence ID 3L_DroMel_CAF1
Location 792,517 – 792,613
Length 96
Max. P 0.837931
window419

overview

Window 9

Location 792,517 – 792,613
Length 96
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 71.57
Mean single sequence MFE -24.38
Consensus MFE -17.30
Energy contribution -19.78
Covariance contribution 2.48
Combinations/Pair 1.15
Mean z-score -1.23
Structure conservation index 0.71
SVM decision value 0.74
SVM RNA-class probability 0.837931
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 792517 96 + 23771897
-GCUUUUCUUUUCUGCAUCCUUGCUGUCAAGUGGUUGGGAUUGGUCUUUGCACGGGAA---GUUCCAUAUCAUCAAUGACAGCUGGGAAU----UAUAUUGGGA
-((...........)).((((.(((((((.((((((((((((..(((......))).)---)))))).)))))...))))))).))))..----.......... ( -28.10)
>DroSec_CAF1 151128 100 + 1
-GCUUUUCUUCUCUUCAUCCUUGCUGUCAAGUGGUUGGGAUUGGUCUUUGCACGGGAA---GUUCCAUAUCAUCAUUGACAGCUGGGAAUCAAUCAUAUUGGGA
-................((((.((((((((((((((((((((..(((......))).)---)))))).)))))..)))))))).))))................ ( -28.80)
>DroSim_CAF1 150343 96 + 1
-GCUUUUCUUCUCUUCAUCUUUGCUGUCAAGUGGUUGGGAUUGGUCUUUGCACGGGAA---GUUCCAUAUCAUCAUUGACAGCUGGGAAU----CAUAUUGGGA
-........((((....(((..((((((((((((((((((((..(((......))).)---)))))).)))))..))))))))..)))..----......)))) ( -26.80)
>DroEre_CAF1 155316 95 + 1
-GCUUUCUUUCUCAUCAUCCUGGCUGUCAAGUGGUUGGGAUUGGUUUUCACAUGG-UA---GUACCAUAUCAUCAAUGACAGCUGGGAAU----UAUAUUGGCA
-(((.............(((..(((((((.((((((((.((((.(........).-))---)).))).)))))...)))))))..)))..----......))). ( -27.20)
>DroAna_CAF1 170949 79 + 1
CCCUUUUCUAUUCUUAUAUAUUUUUGUCAAGUGGGUAA------UCU---AGUGGGAGACGACUCUAUAUCAACCUGAACAGCUGCA----------------A
.......................((((((.((.((((.------...---(((.(....).)))...)))).)).)).)))).....----------------. ( -11.00)
>consensus
_GCUUUUCUUCUCUUCAUCCUUGCUGUCAAGUGGUUGGGAUUGGUCUUUGCACGGGAA___GUUCCAUAUCAUCAUUGACAGCUGGGAAU____CAUAUUGGGA
.................(((..(((((((((((((((((((...((((.....))))....)))))).)))))..))))))))..)))................ (-17.30 = -19.78 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:11 2006