Locus 2788

Sequence ID 3L_DroMel_CAF1
Location 7,913,592 – 7,913,699
Length 107
Max. P 0.998246
window4352

overview

Window 2

Location 7,913,592 – 7,913,699
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.58
Mean single sequence MFE -27.18
Consensus MFE -6.69
Energy contribution -7.57
Covariance contribution 0.88
Combinations/Pair 1.36
Mean z-score -2.78
Structure conservation index 0.25
SVM decision value 3.04
SVM RNA-class probability 0.998246
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7913592 107 + 23771897
UCAAUAAAAAACUCAUUAAUGGCAGGUAUCAUUGUCUCACAGCCCCCCAUGCUCUACCAUCUCCCCC--------UUUUCCCCAUUCCCCACCGGAGGGGC-----AGGGGUUUGUUCAC
..((((((..........((((..(((..............)))..)))).............((((--------(...((((..(((.....))))))).-----)))))))))))... ( -23.44)
>DroSec_CAF1 12897 110 + 1
UCAAUAAAAAACUCAUUAAAGGCAGGUAUCAUUGUCUCACAGCC-CCCAUGCCCCACCAUCUCCC-C--------CUUUACCCCUUCCCCAAGGGAGGGGGGGGGUCGGAGUUUGUUCAC
........((((((.....((((((......))))))..(.(((-((((((......))).....-.--------.....((((((((....)))))))))))))).)))))))...... ( -37.50)
>DroSim_CAF1 13279 111 + 1
UCAAUAAAAAACUCAUUAAAGGCAGGUAUCAUUGUCUCACAGCC-CCCAUGCCCCACCAUCUCCCCC--------CUUUACCCCUUCCCCAAGGGAGGUGGGGGGGCGGAGUUUGUUCAC
........((((((.....((((((......)))))).......-....((((((.(((((((((..--------.................))))))))).))))))))))))...... ( -38.41)
>DroEre_CAF1 13134 91 + 1
UCAAUAAAAAACUCAUUAAUGGGAGGUAUCAUUGUCUCAGACCC-CCCAAACCACACCAUCCCCCC---------AUUUCCCCUUGGCCCAUCUGUGG-------------------CAC
...................((((.(((.............))).-))))..(((((........((---------(........)))......)))))-------------------... ( -15.26)
>DroYak_CAF1 13092 104 + 1
UCAAUAAAAAACUCAUUAAAGGCAGGUAUCAUUGUCUCAGACUC-CCCAAGCCACACCAUCUCCCCCCCCCCCCCCUGCCACCUUUCCCCAACUGGGGGGG---------------ACAC
....................(((.((..((.........))..)-)....)))................(((((((..................)))))))---------------.... ( -21.27)
>consensus
UCAAUAAAAAACUCAUUAAAGGCAGGUAUCAUUGUCUCACAGCC_CCCAUGCCCCACCAUCUCCCCC________CUUUCCCCCUUCCCCAACGGAGGGGG______GG_GUUUGUUCAC
....................((..(((((...................)))))...)).......................(((((((.....))))))).................... ( -6.69 =  -7.57 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:40 2006