Locus 2787

Sequence ID 3L_DroMel_CAF1
Location 7,910,994 – 7,911,096
Length 102
Max. P 0.992944
window4351

overview

Window 1

Location 7,910,994 – 7,911,096
Length 102
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 89.86
Mean single sequence MFE -37.43
Consensus MFE -32.53
Energy contribution -32.53
Covariance contribution 0.00
Combinations/Pair 1.10
Mean z-score -2.98
Structure conservation index 0.87
SVM decision value 2.36
SVM RNA-class probability 0.992944
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7910994 102 + 23771897
UCUGUACACGUUGCGAAUGAACUGCGGAUGGAAUCAUCAUCAUCAUUA--CUUCUCUUCUGGUGGUCCAAAUCCCCAUCUGCAGGCAGCGGCGGCGGUGCAAAA
..(((((.((((((...((..((((((((((.......(((((((...--.........)))))))........)))))))))).))...)))))))))))... ( -36.16)
>DroSec_CAF1 10316 101 + 1
UCUGUACACGUUGCGAAUGAACUGCGGAUGGAAUCAUCAUCAUCAUUA---UACUCUUCUGGUGGUGCAAAUCCCCAUCUGCAGUUAGCGGCGGCGGUGCAAAA
..(((((.((((((.....((((((((((((......((((((((...---........)))))))).......))))))))))))....)))))))))))... ( -41.02)
>DroEre_CAF1 10630 103 + 1
UCUGUACACGUUGCGAAUGAACUGCAGAUGGAGUCAUCAUCGUCAUUAUAAUCCUCUGCUGGUGGUCAAAAUC-CCAUCUGCAGGCAGCGGCGGCGGUGCAAAA
..(((((.((((((...((..((((((((((..(.(((((((.((...........)).)))))))....)..-)))))))))).))...)))))))))))... ( -37.30)
>DroYak_CAF1 10494 100 + 1
UCUGUACACGUUGCGAAAGAGCUGCGGAUGGAAUCAUCAUC---AUCAUAAUCCUCUUCUGGUGGUCCAAAUC-CCAUCUGCAGGCAGCGGCGGCGGUGCAAAA
..(((((.((((((....(..((((((((((.......(((---((((.((.....)).))))))).......-)))))))))).).))))))...)))))... ( -35.24)
>consensus
UCUGUACACGUUGCGAAUGAACUGCGGAUGGAAUCAUCAUCAUCAUUA__AUCCUCUUCUGGUGGUCCAAAUC_CCAUCUGCAGGCAGCGGCGGCGGUGCAAAA
..(((((.((((((...((..((((((((((....(((((((.................)))))))........)))))))))).))...)))))))))))... (-32.53 = -32.53 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:39 2006