Locus 2783

Sequence ID 3L_DroMel_CAF1
Location 7,901,291 – 7,901,383
Length 92
Max. P 0.974558
window4343

overview

Window 3

Location 7,901,291 – 7,901,383
Length 92
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 80.04
Mean single sequence MFE -25.12
Consensus MFE -23.03
Energy contribution -22.75
Covariance contribution -0.28
Combinations/Pair 1.10
Mean z-score -2.10
Structure conservation index 0.92
SVM decision value 1.73
SVM RNA-class probability 0.974558
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7901291 92 - 23771897
AAUCGGCACCAGUUUUACUGCUUGUGCAGUGCGUUUCAUGGCUAAAAGACUGAUUU-A----------UCAAUGGUCUUUCGGUUCUGAAGCAUUAUACAUAC
.....((((.(((......))).)))).....((((((..((..(((((((.....-.----------.....)))))))..))..))))))........... ( -26.40)
>DroSec_CAF1 592 91 - 1
AAUCGGCACCAGUUUUACUGCCCUUGCAGUGCGUUUCACGGCUAAAAGACUGAUUUUU----------UAAAUGGUCUUUCGGUUCUGAAGCAUUAUACAU--
...............((((((....)))))).((((((..((..((((((((.((...----------.)).))))))))..))..)))))).........-- ( -24.30)
>DroSim_CAF1 607 90 - 1
AAUCGGCACCAGUUUUACUGCUCACGCAGUGCGUUUCAAGGCUAAAAGACUGAUUU-U----------UAAAUGGUCUUUCGGUUCUGAAGCAUUAUACAU--
...............((((((....)))))).((((((..((..(((((((.....-.----------.....)))))))..))..)))))).........-- ( -25.80)
>DroEre_CAF1 857 95 - 1
AAUCGGCACCAGUUUUACUGCCCUUGCAGUGCGUUUCAAGGCUAAAAUACUGUUUU-AAUGAGCAUACCCACCGGUAUUUUGGUUCUAAAGCACUA-------
.....(((.(((.....)))....)))(((((.(((.(..((((((((((((....-...............))))))))))))..))))))))).------- ( -22.01)
>DroYak_CAF1 604 95 - 1
AAUCGGCACCAGUUUUACUGCUCUUGCAGUGCGUUUCAAGGCUAAAAGACUGUUUA-AAUGAGCGUACCCACUGGUCUUUCGGUUCUGGAGCACUA-------
..........(((..((((((....)))))).((((((..((..(((((((((((.-...))))((....)).)))))))..))..))))))))).------- ( -27.10)
>consensus
AAUCGGCACCAGUUUUACUGCUCUUGCAGUGCGUUUCAAGGCUAAAAGACUGAUUU_A__________UCAAUGGUCUUUCGGUUCUGAAGCAUUAUACAU__
...............((((((....)))))).((((((..((..(((((((......................)))))))..))..))))))........... (-23.03 = -22.75 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:32 2006