Locus 2782

Sequence ID 3L_DroMel_CAF1
Location 7,888,918 – 7,889,030
Length 112
Max. P 0.708201
window4342

overview

Window 2

Location 7,888,918 – 7,889,030
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.98
Mean single sequence MFE -35.55
Consensus MFE -14.52
Energy contribution -16.94
Covariance contribution 2.42
Combinations/Pair 1.23
Mean z-score -2.17
Structure conservation index 0.41
SVM decision value 0.37
SVM RNA-class probability 0.708201
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7888918 112 - 23771897
UAUAGCCUGCGUUCCA----CAGAUGGUAAA---UCCAU-CCAGGAUCGCCCGAAUCGAUGGCAUCUCUGAGCGAAACACUUCGUAGCCACUGGCCCAUCGCUUUGUUCGGUGUGAUCCU
................----..(((((....---.))))-).((((((((((((((((((((.........(((((....))))).(((...)))))))))....)))))).)))))))) ( -39.60)
>DroPse_CAF1 46912 106 - 1
UAUUAUUUACAAUUCA----CACACAACAAA---CCCCCACAUGGAUU-------UUGAUGGCCACCUUGAACGAGACCUUUCGCUCACACUGGCUCAUCUCCAUCUUCGGAUUGGCCCU
................----.......(((.---((.....(((((..-------..((((((((...(((.((((....)))).)))...)))).)))))))))....)).)))..... ( -22.20)
>DroSec_CAF1 41787 112 - 1
UAUAGACAGCGUUCCA----CAGAUGGUAAA---UCCAU-CCAGGAUCGCCCGAAUCGAUGGCAUCCCUGAACGAAACACUUCGUAGCCACUGGCCCAUCGCUCUGUUCGGUGUGAUCCU
................----..(((((....---.))))-).((((((((((((((((((((.........(((((....))))).(((...)))))))))....)))))).)))))))) ( -39.30)
>DroSim_CAF1 42009 112 - 1
UAUAGCCAGCGUUCCA----CAGAUGGUAAA---UCCAU-CCAGGAUCGCCCGAAUCGAUGGCAUCCCUGAACGAAACACUUCGUAGCCACUGGCCCAUCGCUCUGUUCGGUGUGAUCCU
................----..(((((....---.))))-).((((((((((((((((((((.........(((((....))))).(((...)))))))))....)))))).)))))))) ( -39.30)
>DroEre_CAF1 45302 115 - 1
UGUCGCCUGCGCUCCA----CAGAUGGUAAACCACCCAU-CUUGGAUCGCCCGCGUCCAUGGCAUCUCUAGGCGAAACGCUCCGUGGCCACUGGCCCAUCGCCCUGUUUGGAGUGAUACU
..(((((((((.((((----.((((((........))))-)))))).)))..((.......))......))))))..(((((((.(((....(((.....)))..))))))))))..... ( -41.20)
>DroYak_CAF1 35184 119 - 1
UAUCGCCUGCGUUCCACACACAGAUGGUAAAGCACCCAU-CCUGGAUCGGCUGCAUCCAUGGCAUCGCUGAACGAAACGCUCCGCAGCCACUGGCCCAUCGCCCUGUUCGGUGUGAUCCU
....(((...(.((((......(((((........))))-).)))).)((((((......(((.(((.....)))...)))..))))))...)))..(((((((.....)).)))))... ( -31.70)
>consensus
UAUAGCCUGCGUUCCA____CAGAUGGUAAA___CCCAU_CCAGGAUCGCCCGAAUCGAUGGCAUCCCUGAACGAAACACUUCGUAGCCACUGGCCCAUCGCCCUGUUCGGUGUGAUCCU
.......................((((........))))....((((((((((...(((((((........(((((....)))))........)).))))).......))).))))))). (-14.52 = -16.94 +   2.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:31 2006