Locus 2780

Sequence ID 3L_DroMel_CAF1
Location 7,872,644 – 7,872,750
Length 106
Max. P 0.515833
window4340

overview

Window 0

Location 7,872,644 – 7,872,750
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.16
Mean single sequence MFE -25.66
Consensus MFE -18.37
Energy contribution -17.93
Covariance contribution -0.44
Combinations/Pair 1.17
Mean z-score -1.02
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.515833
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7872644 106 - 23771897
ACUCAUAUCCUGAAAUCAGACUGGUUCUGGUAUACCAUACAGAAUGGCUAUGCCAAUGAGAUGGACUAUCUGUUUGGCGACGUAAGUAG----------AUCACUAUU----AAAUUGUU
(((.(..(((..((..((((.(((((((((((((((((.....)))).))))))).......))))))))))))..).))..).)))..----------.........----........ ( -23.71)
>DroVir_CAF1 39628 103 - 1
ACGCACAUUCUGAAAUCGGACUGGUUCUGGUAUACCAUACAGAAUGGCUAUGCCAACGAGAUGGAUUAUCUAUUUGGCGAUGUAAGUGC-------------CAUAUU----AAACACAU
..((.(((((((.....(((....)))(((....)))..)))))))))..((((((..(((((...)))))..))))))......(((.-------------......----...))).. ( -24.70)
>DroGri_CAF1 32853 103 - 1
ACGCACAUUCUGAAAUCGGACUGGUUCUGGUAUACAAUCCAGAAUGGCUAUGCCAACGAGAUGGAUUAUCUGUUUGGCGAUGUAAGCAG-------------CAAGAA----ACACCCUU
..((.((.((((....)))).))(((((((........))))))).(((.((((((..(((((...)))))..)))))).....))).)-------------).....----........ ( -26.50)
>DroMoj_CAF1 37506 103 - 1
ACUCACAUUCUGAAAUCGGACUGGUUCUGGUAUACCAUACAGAAUGGCUACGCCAACGAGAUGGAUUAUCUAUUUGGCGAUGUAAGUGC-------------AAUCGA----AUACCUAU
..((.(((((((.....(((....)))(((....)))..)))))))((..((((((..(((((...)))))..))))))..))......-------------....))----........ ( -23.60)
>DroAna_CAF1 29598 102 - 1
ACUCACAUCCUGAAAUCAGACUGGUUCUGGUAUACCAUCCAGAAUGGCUAUGCCAACGAGAUGGACUAUCUGUUCGGCGACGUAAGUA-----------AUCU---UU----AAACAAUC
(((.((.(((((((..((((.(((((((((((((((((.....)))).))))))).......))))))))))))))).)).)).))).-----------....---..----........ ( -27.01)
>DroPer_CAF1 28468 120 - 1
ACACACAUCCUGAAAUCAGACUGGUUCUGGUAUACCAUACAGAAUGGCUAUGCCAACGAGAUGGACUAUCUGUUCGGAGACGUAAGUAUCCUUAGCUUUGUCACUGUUCCCUACUUUGUU
.........(((((..((((.(((((((((((((((((.....)))).))))))).......))))))))))))))).((((.((((.......)))))))).................. ( -28.41)
>consensus
ACUCACAUCCUGAAAUCAGACUGGUUCUGGUAUACCAUACAGAAUGGCUAUGCCAACGAGAUGGACUAUCUGUUUGGCGACGUAAGUAC_____________AAUAUU____AAACACUU
....((.(((((((..((((.(((((((((((((((((.....)))).))))))).......))))))))))))))).)).))..................................... (-18.37 = -17.93 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:29 2006