Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 791,294 – 791,393 |
Length | 99 |
Max. P | 0.611943 |
Location | 791,294 – 791,393 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 90.53 |
Mean single sequence MFE | -23.03 |
Consensus MFE | -18.58 |
Energy contribution | -18.78 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.43 |
Structure conservation index | 0.81 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 791294 99 + 23771897 UUAGAAUGUUAUUUGCACUUAUUUUGUAU--UGGCUAAUAAUUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUG-- .(((((((((..((((((...........--((((((.....)))))).........))))))........(((((((((...))))))))))))))))))-- ( -25.15) >DroSec_CAF1 148054 101 + 1 UUAGAAUGUUAUUUGCACUCAUUUUGUAU--UGGCUAAUAAUUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUGCA .(((((((((..((((((...........--((((((.....)))))).........))))))........(((((((((...)))))))))))))))))).. ( -25.65) >DroSim_CAF1 149106 101 + 1 UUAGAAUGUUAUUUGCACUUAUUUUGUAU--GGGCUAAUAAUUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUGCA .(((((((((..((((((...........--.(((((.....)))))..........))))))........(((((((((...)))))))))))))))))).. ( -24.95) >DroEre_CAF1 154084 103 + 1 UUAAGAUAGUAUUUUCACACAUAUUGUUUCCCGCCUAAUAAGUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUGCG ...(((((((((........)))))))))..(((..(((....(((((.((((......)))).)))))..(((((((((...)))))))))...)))..))) ( -21.30) >DroYak_CAF1 153678 103 + 1 UUAAAAUGUUAUUUUCACAUAUAUUGUUUCCUGCCUAAUAAUUGACUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUGCGAUUGGUAAACGUUUUGCG .(((((((((......................(((..............................)))...(((((((((...)))))))))))))))))).. ( -18.11) >consensus UUAGAAUGUUAUUUGCACUUAUUUUGUAU__UGGCUAAUAAUUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUGCA .(((((((((.................................(((((.((((......)))).)))))..(((((((((...)))))))))))))))))).. (-18.58 = -18.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:10 2006