Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,870,109 – 7,870,199 |
Length | 90 |
Max. P | 0.648431 |
Location | 7,870,109 – 7,870,199 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 86.45 |
Mean single sequence MFE | -16.45 |
Consensus MFE | -16.33 |
Energy contribution | -15.28 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.33 |
Mean z-score | -1.09 |
Structure conservation index | 0.99 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7870109 90 - 23771897 UAAAAACCCUAUCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCGUUCAAAGCAU .................---------------....((((.....((((((((....)).))))))..((..(((((((.....))))))).))..))))..... ( -15.80) >DroSec_CAF1 23184 90 - 1 UAAAAACCCUACCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCAUUCAAAGCUU .................---------------....((((.....((((((((....)).))))))..((..(((((((.....))))))).))..))))..... ( -15.80) >DroSim_CAF1 23366 90 - 1 UAAAAACCCUACCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCAUUCAAAGCAU .................---------------....((((.......))))......(((((((((..((..(((((((.....))))))).)))))).))))). ( -16.00) >DroEre_CAF1 26579 89 - 1 UAA-AACCCUAUCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCGUUCAGAGCAU ...-.............---------------..............(((((((...(((((......)))))(((((((.....)))))))..))))..)))... ( -15.70) >DroYak_CAF1 16218 90 - 1 UAAAAACCCUAUCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGGCCCUAAGUCGUAAGGCAUUCAAAGCAU .................---------------....((((.......))))......(((((((((..((..(((((((.....))))))).)))))).))))). ( -15.40) >DroAna_CAF1 27012 102 - 1 AAA-AACCCC-CCUUACUACUUACUACUACUAUAUAUUGAUUAAAGCUCAACGAU-CUGCUUGAGUAGGCAUUUACGGCCCUAAGCCGUAGUGUAAUCGAAGCAU ...-......-.........................((((((...((((((....-....))))))..(((((.(((((.....))))))))))))))))..... ( -20.00) >consensus UAAAAACCCUACCUUAC_______________CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCAUUCAAAGCAU ....................................((((.....((((((((....)).))))))..((..(((((((.....))))))).))..))))..... (-16.33 = -15.28 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:26 2006